View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13248_low_11 (Length: 255)

Name: NF13248_low_11
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13248_low_11
NF13248_low_11
[»] chr2 (19 HSPs)
chr2 (1-246)||(28102274-28102513)
chr2 (153-246)||(27968452-27968545)
chr2 (153-246)||(28092042-28092135)
chr2 (163-241)||(10849930-10850008)
chr2 (160-241)||(10493375-10493456)
chr2 (162-241)||(10545591-10545670)
chr2 (160-227)||(7481724-7481791)
chr2 (162-241)||(10463876-10463955)
chr2 (160-241)||(7478124-7478205)
chr2 (162-241)||(10507936-10508015)
chr2 (162-241)||(10518820-10518899)
chr2 (163-241)||(10475073-10475151)
chr2 (160-241)||(10489302-10489383)
chr2 (40-83)||(10849809-10849852)
chr2 (28-62)||(10489168-10489202)
chr2 (28-64)||(10474945-10474981)
chr2 (28-62)||(7478290-7478324)
chr2 (38-82)||(10507807-10507851)
chr2 (163-239)||(10863420-10863496)
[»] chr8 (1 HSPs)
chr8 (200-240)||(44343083-44343123)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28102513 - 28102274
Alignment:
Q  1 tccgagatgaaaatcattgacttgcaatcaacactttaagacaatatgttgataaactatttattagaagtaaaacatatgacggatatcttcgcaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28102513 tccgagatgaaaatcattgacttgcaatcaacactttaagacaatatgttgataaactatttattagaagtaaaacatatgacggatatcttcgcaaaac 28102414  T
Q  101 gtaaaccggcctagtgattaacatgtaaaactcctatnnnnnnnnnnnnnnnttgttaacaacacacctcaagatcagttgctgatatgggcttatcact 200  Q
    |||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28102413 gtaaaccggcctagtgattaacatgtaaaactcctat------aaaaaataattgttaacaacacacctcaagatcagttgctgatatgggcttatcact 28102320  T
Q  201 gcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 246  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28102319 gcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 27968452 - 27968545
Alignment:
Q  153 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  27968452 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 28092135 - 28092042
Alignment:
Q  153 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28092135 ttgttaacaacacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 10849930 - 10850008
Alignment:
Q  163 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    |||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||  |||||||    
T  10849930 cacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 10493375 - 10493456
Alignment:
Q  160 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    ||||||||||||||||||| |||||| ||||| || ||||||| |||||||||||||||||||||||||||||  |||||||    
T  10493375 caacacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10545591 - 10545670
Alignment:
Q  162 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||| |||| ||| ||||    
T  10545591 acacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 7481791 - 7481724
Alignment:
Q  160 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtc 227  Q
    |||||||||||||||||||  ||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  7481791 caacacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatcgtc 7481724  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10463876 - 10463955
Alignment:
Q  162 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||| |||||||||||||| ||||| | ||||||||    
T  10463876 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 7478205 - 7478124
Alignment:
Q  160 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    ||||||||||||||||||| | ||||  ||| ||| |||||||||||||||||||||||||||| ||||||||  |||||||    
T  7478205 caacacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10507936 - 10508015
Alignment:
Q  162 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    ||||||||||||||||| ||||||||||||||| ||||  |  ||||||||||||||||||||||| ||||  |||||||    
T  10507936 acacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10518820 - 10518899
Alignment:
Q  162 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    |||||||| ||||||||  ||||||||||||||  || ||||||||||||||||||||||| |||||||||  |||||||    
T  10518820 acacaccttaagatcagcagctgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 10475073 - 10475151
Alignment:
Q  163 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    |||||||||||||||| |||||| |||||||| ||||  |  |||||||| |||||||||||||||||||  |||||||    
T  10475073 cacacctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 10489302 - 10489383
Alignment:
Q  160 caacacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacacag 241  Q
    |||||||||| |||||||| ||||||||| ||||| ||||     ||||||||||||||||||||||||||||  |||||||    
T  10489302 caacacacctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 10849809 - 10849852
Alignment:
Q  40 gacaatatgttgataaactatttattagaagtaaaacatatgac 83  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  10849809 gacaatatgttgataaactatttgttagaagtagaacatatgac 10849852  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 10489168 - 10489202
Alignment:
Q  28 tcaacactttaagacaatatgttgataaactattt 62  Q
    |||||||||||||||||||||||||||||||||||    
T  10489168 tcaacactttaagacaatatgttgataaactattt 10489202  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 10474945 - 10474981
Alignment:
Q  28 tcaacactttaagacaatatgttgataaactatttat 64  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10474945 tcaacacttgaagacaatatgttgataaactatttat 10474981  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 7478324 - 7478290
Alignment:
Q  28 tcaacactttaagacaatatgttgataaactattt 62  Q
    ||||||||| |||||||||||||||||||||||||    
T  7478324 tcaacacttgaagacaatatgttgataaactattt 7478290  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 10507807 - 10507851
Alignment:
Q  38 aagacaatatgttgataaactatttattagaagtaaaacatatga 82  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||    
T  10507807 aagacaatatgttgataaactatttgttaaaacaaaaacatatga 10507851  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 10863420 - 10863496
Alignment:
Q  163 cacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttatcgtccacctttgacac 239  Q
    ||||||||||| |||| | |||||||  |  | |||||| ||| |||||||||||||||||| ||||||| ||||||    
T  10863420 cacacctcaagttcagctcctgatataagtctgtcactggaaagagcttcagcaagtttatcatccacctctgacac 10863496  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 44343083 - 44343123
Alignment:
Q  200 tgcaaaaagcttcagcaagtttatcgtccacctttgacaca 240  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  44343083 tgcaaaaagcttgagcaagtttatcatctacctttgacaca 44343123  T

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