View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_low_12 (Length: 251)
Name: NF13248_low_12
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 33686124 - 33686310
Alignment:
| Q |
4 |
ctgtctttgaattggtaatttaatttgatttcattcattgctttgtgcttatgctatgaaatgtggatgatgatgatggtgggtacctgcaaattagaag |
103 |
Q |
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| T |
33686124 |
ctgtctttgaattggtgatttaatttgatttcattcattgctttgtgcttatgctatgaaatgtggatgatgatgatggtgggtacctgcaaattagaag |
33686223 |
T |
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| Q |
104 |
acaacaatacaccaataaataacatatttacacataaggattaattcaacaatgatacatcttaaagaataacccattttacaacaa |
190 |
Q |
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| T |
33686224 |
acaacaatacaccaataaataacacatttacacataaggattaattcaacaatgatacatcttaaagaataacccattttacaacaa |
33686310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19886190 - 19886126
Alignment:
| Q |
20 |
aatttaatttgatttcattcattgctttgtgcttatgctatgaaatgtggatgatgatgatggtg |
84 |
Q |
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| T |
19886190 |
aattgaatttgatttgattcattgttttgtgtttatgctatgaaatgtgaatgatgatgatggtg |
19886126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 34588632 - 34588707
Alignment:
| Q |
88 |
acctgcaaattagaagacaa-caatacaccaataaataacatatttacacataaggattaattcaacaatgataca |
162 |
Q |
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| T |
34588632 |
acctgcaaattggaagaaaaacaatacaccattaaatcacgcatttacgcataaggattaattcaacaattataca |
34588707 |
T |
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