View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_low_18 (Length: 208)
Name: NF13248_low_18
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 413946 - 413796
Alignment:
| Q |
41 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttg |
140 |
Q |
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| T |
413946 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattcttattacttatttcatcaaactttttcg |
413847 |
T |
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| Q |
141 |
aggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctg |
191 |
Q |
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| T |
413846 |
aggcttgaatttcccctgccaatgcctcctgctcaagagggtcactttctg |
413796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 413966 - 413937
Alignment:
| Q |
12 |
catcatcatcttcctcttccgccattgcag |
41 |
Q |
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| T |
413966 |
catcatcatcttcctcttccgccattgcag |
413937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 37212247 - 37212350
Alignment:
| Q |
14 |
tcatcatcttcctcttccgccattgcagccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattct |
113 |
Q |
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| T |
37212247 |
tcatcatcttccgctcccgccatggaaaccagttgagttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatatgattct |
37212346 |
T |
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| Q |
114 |
catt |
117 |
Q |
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|||| |
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| T |
37212347 |
catt |
37212350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 37202906 - 37203046
Alignment:
| Q |
42 |
ccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttga |
141 |
Q |
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| T |
37202906 |
ccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttccga---------tttgttgcttcctcaaacctatgtga |
37202996 |
T |
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| Q |
142 |
ggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctg |
191 |
Q |
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| T |
37202997 |
ggcttgaatttcccctgccaatggctcctgctcaagaggtacactttctg |
37203046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 37183841 - 37183896
Alignment:
| Q |
48 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
103 |
Q |
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| T |
37183841 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37183896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 37194973 - 37195028
Alignment:
| Q |
48 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
103 |
Q |
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| T |
37194973 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37195028 |
T |
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