View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13248_low_2 (Length: 533)

Name: NF13248_low_2
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13248_low_2
NF13248_low_2
[»] chr2 (1 HSPs)
chr2 (23-514)||(28102737-28103244)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 23 - 514
Target Start/End: Complemental strand, 28103244 - 28102737
Alignment:
Q  23 aagacattgattgtgatcttgggaattttgagaattacttggattagggtatctttgagcattagagtgtgatattattgggttcttcaattgaggattt 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28103244 aagacattgattgtgatcttgggaattttgagaat-acttggattagggtatctttgagcattagagtgtgatattattgggttcttcaattgaggattt 28103146  T
Q  123 tcttcatttattccgtgcatcttcaattgacattttgtcaagaatcaaatgaggatcaaaggtcaagcaacttatacgatcaaaggaggttcaaagggtt 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28103145 tcttcatttattccgttcatcttcaattgacattttgtcaagaatcaaatgaggatcaaaggtcaagtaacttatacgatcaaaggaggttcaaagggtt 28103046  T
Q  223 gagtagctcatcctatcaaaggaaactcaaggattaaattgctcgtcacattgcttggacaagtgtaattgatttcaagggttgaaagttgattctta-- 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  28103045 gagtagctcatcctatcaaaggaaactcaaggattaaattgctcgtcacattgcttggacaagtgtaattgatttcaagggttgaaagttgattcttaag 28102946  T
Q  321 --------------tcacatcaaagaattggtgaaggattgcggttctaggtagaaacttcaaggctcagggatcaatacttgttgtgaacattgtatca 406  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  28102945 agtcaagagtctagtcacatcaaagaattggtgaaggattgcggttctaggtagaaacttcaagactcggggatcaatacttgctgtgaacattgtatca 28102846  T
Q  407 aacacttggttttcaatatggtcaacaaaacttcattgacatgtctttaggagtggagtggcccactagtgaggacagggtgggtgaaccattat-aatc 505  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||    
T  28102845 aacacttggttttcaatatgttcaacaaaacttcattgacatgtctttaggagtggagtggcccactagtgaggacggtgtgggtgaatcattataaatc 28102746  T
Q  506 tctgtgttc 514  Q
    |||||||||    
T  28102745 tctgtgttc 28102737  T

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