View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13248_low_3 (Length: 515)
Name: NF13248_low_3
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 35929135 - 35929616
Alignment:
| Q |
18 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929135 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
35929234 |
T |
|
| Q |
118 |
ctcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929235 |
ctcacgctgagtagtaaacaagcataaagagaaaccttcttcatcttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaa |
35929334 |
T |
|
| Q |
218 |
acagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaagaaacaagagaacgatgacactagtattgaccaggcaatgatcagccgg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35929335 |
acagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaagaaacaagagaacgatgacattagtattgaccaggcaatgatcagccgg |
35929434 |
T |
|
| Q |
318 |
ctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgatta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929435 |
ctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgatta |
35929534 |
T |
|
| Q |
418 |
acttttaaacttaatgataaatatattttgtcctctatcttattgttgccgtttatgcagttgtactgtatcttcatcacag |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35929535 |
acttttaaacttaatgataaatatattttgtcctctaacttattgttgccgtttatgcacttgtactgtatcttcatcacag |
35929616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 35935778 - 35936261
Alignment:
| Q |
18 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| |||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||| | | |
|
|
| T |
35935778 |
agaaagagtcttgggaggattctgtgattttctagacagaaaaagctcatcaagtttatcagcttgactagctttgctataaggaaaaataaccaagaga |
35935877 |
T |
|
| Q |
118 |
ctcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttgg-tttccatatatcttagtttc-tat----ctatttataga |
211 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||| |||| |||||| |||| || |||| ||| ||||| || |||||| ||| ||||||||||| |
|
|
| T |
35935878 |
ctcaagttgagtaataaacaagcataaagagaaattttcttcatcttgttcttaagttggttttgtatata-ctaagtttcttatcttactatttataga |
35935976 |
T |
|
| Q |
212 |
tacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaagaaacaagagaacgatgacactagtat-------tgaccaggc |
304 |
Q |
| |
|
|| ||||||||| | | || | | ||||||||||||| |||||| |||||||||||||||||||| ||| ||| || ||| |||||| || |
|
|
| T |
35935977 |
taaaaaacagtggcaattttgcatgacttgttttgttgttgttgga-gcatgtgaaagaaacaagagtgtgataacattactattgactactgaccatgc |
35936075 |
T |
|
| Q |
305 |
aatgatcagccggct-gatttaatatagtttctccttgaatgtaatggattgtccttgtttccctttttctagacacatatcaagttatttaacaattta |
403 |
Q |
| |
|
|| |||||||||||| | |||||| |||||||| |||||||| ||||||||||| |||||||||| ||| |||| |||| ||||||||||||||||||| |
|
|
| T |
35936076 |
aa-gatcagccggctggttttaatttagtttcttcttgaatgcaatggattgtctttgtttccctgtttgtagaatcataacaagttatttaacaattta |
35936174 |
T |
|
| Q |
404 |
gcactttgtgattaacttttaaacttaatgataaatatattttgtcctctatcttattgttgccgtttatgcagttgtactgtatcttcat |
494 |
Q |
| |
|
||||||||| ||||||||| ||| |||||| ||||| ||| ||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
35936175 |
gcactttgtcattaactttgaaagttaatg----atatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
35936261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 35911808 - 35912013
Alignment:
| Q |
19 |
gaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| | || |
|
|
| T |
35911808 |
gaaagagtcttaggaggattctgtgaggttctagacagaataaactcaacaagtttatcagcttgactagctttgcaatatggaaaaataaccaatagac |
35911907 |
T |
|
| Q |
119 |
tcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagatacaaa |
217 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||| | |||||||| |||||||||||| ||| |
|
|
| T |
35911908 |
tcaagttgagtagtaaacaagcataaagagaaaccttcttcatcttgttctcaacttggcttcaatatatcataagtttctaactatttatagatgaaaa |
35912007 |
T |
|
| Q |
218 |
acagtg |
223 |
Q |
| |
|
|||||| |
|
|
| T |
35912008 |
acagtg |
35912013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 35916194 - 35916641
Alignment:
| Q |
18 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35916194 |
agaaagtgtcttaggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaaga |
35916293 |
T |
|
| Q |
118 |
c---tcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagata |
213 |
Q |
| |
|
| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| | |||||||| |||||||||||| |
|
|
| T |
35916294 |
ctgatcaaattgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaatatatcataagtttctaactatttatagatg |
35916393 |
T |
|
| Q |
214 |
caaaacagtgaaagtattttagggcttgtt---ttgttgtggttggaggcatgtgaaagaaacaagagaacgatgaca-ctagtattga----------- |
298 |
Q |
| |
|
|||||| ||| | | || ||| ||| || ||||| | ||||||| |||||||||||||||||||| ||| ||| ||| ||||| |
|
|
| T |
35916394 |
aaaaacattgacaattttgaaggacttatttggttgttcttgttggagccatgtgaaagaaacaagagagagataacatctaccattgaggcattgacca |
35916493 |
T |
|
| Q |
299 |
----ccaggcaatgatcagccggct-gatttaatatagt---ttctccttgaatgtaat-----ggattgtccttgtttccctttttctagacacatatc |
385 |
Q |
| |
|
||| ||| ||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
35916494 |
atgtccatgcattgatcagccggctatgtttaatttagtttcttctccttgaatgtaatgtaagggattgtcattgtttccctttttctagaatcatatc |
35916593 |
T |
|
| Q |
386 |
aagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
433 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||| |||||| |
|
|
| T |
35916594 |
aagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 35941328 - 35941497
Alignment:
| Q |
18 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35941328 |
agaaagagtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaataaa |
35941427 |
T |
|
| Q |
118 |
ctcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatata |
187 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
35941428 |
ctcaagttgagtattaaacaagcataaagagaaaccttctccatcttgttctcaacttgatttctatata |
35941497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 35922463 - 35922658
Alignment:
| Q |
18 |
agaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaa |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922463 |
agaaagtgtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaagg |
35922562 |
T |
|
| Q |
118 |
ctcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagat |
212 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| | |||||||| | |||||||||| |
|
|
| T |
35922563 |
ctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaacatatcataagtttctaacaatttatagat |
35922658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 478
Target Start/End: Original strand, 35922772 - 35922909
Alignment:
| Q |
340 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
436 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
35922772 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatg--- |
35922868 |
T |
|
| Q |
437 |
aatatattttgtcctctatcttattgttgccgtttatgcagt |
478 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
35922869 |
-atatatttgttcctctaacttattgttgtggtttatgcagt |
35922909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 35912129 - 35912219
Alignment:
| Q |
345 |
gtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
433 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| ||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
35912129 |
gtaatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg |
35912219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 35941632 - 35941721
Alignment:
| Q |
333 |
ttctccttgaatgtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
422 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35941632 |
ttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttagcactttgtaattaacttt |
35941721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University