View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_low_4 (Length: 388)
Name: NF13248_low_4
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 27507580 - 27507219
Alignment:
| Q |
11 |
caaaggctccagtatgacaattgttcaatatagaatcgtaagacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaac |
110 |
Q |
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| T |
27507580 |
caaaggctccagtatgacaattgttcaatatagaatcgtaagacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaac |
27507481 |
T |
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| Q |
111 |
atttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaa |
210 |
Q |
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| T |
27507480 |
atttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaa |
27507381 |
T |
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| Q |
211 |
ataacgcttaaaaggcgttatcaaagtcgcatgaatagcacacacttgttctttgaatcatattcttttcccttattctttcatgtacatttgatggtag |
310 |
Q |
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| T |
27507380 |
ataactcttaataggcgttatcaaagtcgcatgagtagcacacacttgttctttgaatcatatttttttcccttattctttcatgtacatttgatggtag |
27507281 |
T |
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| Q |
311 |
gtcctttccccattagctaattgaaatagcaaaactaattttgttctgtggatacaacttat |
372 |
Q |
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| T |
27507280 |
gtcctttccccgttagctaattgaattagcaaaactgattttgttctgtggatacaacttat |
27507219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 79 - 320
Target Start/End: Complemental strand, 27502500 - 27502259
Alignment:
| Q |
79 |
tctctcttgaaaagaaattgtccaatgttaacatttcactacaagtgcactctaacaatattttaatttcactctgttaatgcctaaaaaagttataatc |
178 |
Q |
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| T |
27502500 |
tctctcttgaaaagaaattgtctaatgttaagatttcactacaagtgctctctaacaaaattttaatttcagtctgttaatgcctaaaatagttataatc |
27502401 |
T |
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| Q |
179 |
gtctggatcatctgatgtgcatgttattccaaataacgcttaaaaggcgttatcaaagtcgcatgaatagcacacacttgttctttgaatcatattcttt |
278 |
Q |
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| T |
27502400 |
gtctgggtcatctgatctgcatgttgctccaaataacacttcaaaggtgatatcaaaatcgcttgaatagtacacacttgttctttgaatcatattcttt |
27502301 |
T |
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| Q |
279 |
tcccttattctttcatgtacatttgatggtaggtcctttccc |
320 |
Q |
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| T |
27502300 |
ttccttattcttccatgttaatttggtggtaattcctttccc |
27502259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 27484577 - 27484804
Alignment:
| Q |
51 |
agacggtcattaaatgaaaacaattatttctctcttgaaaagaaattgtccaatgttaacatttcactacaagtgcactctaacaatattttaatttcac |
150 |
Q |
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| T |
27484577 |
agacgatcattgaatgaaaa-attaatttctcttttgaaaagaaactgtccaatgttaacatttcactacaaatgcaatctaacaacattttaatttcag |
27484675 |
T |
|
| Q |
151 |
tctgttaatgcctaaaaaagttataatcgtctggatcatctgatgtgcatgttattccaaataacgcttaaaaggcgttatcaaagtcgcatgaatagca |
250 |
Q |
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| T |
27484676 |
tctgttaatgcctaaaaaagttataattgtttgggtcatctgatctgcatgttgctccaaataatgcttcaaaggcattatccaagtcgcatgaatagca |
27484775 |
T |
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| Q |
251 |
cacacttgttctttgaatcatattctttt |
279 |
Q |
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| T |
27484776 |
cacacttgttctttgagtcatattatttt |
27484804 |
T |
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