View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_low_5 (Length: 365)
Name: NF13248_low_5
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_5 |
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| [»] scaffold2134 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 37337601 - 37337811
Alignment:
| Q |
18 |
tgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgccttattccaaacgaaatcatgagaaaatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37337601 |
tgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgcactgaacagtatcatttgccttattccaaacgaaatcatgagaaaatc |
37337700 |
T |
|
| Q |
118 |
aaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatctgtcatcattagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37337701 |
aaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacatgtatataacatctgtcatcattagaa |
37337800 |
T |
|
| Q |
218 |
tgctttcccta |
228 |
Q |
| |
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||||||||||| |
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| T |
37337801 |
tgctttcccta |
37337811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 11300576 - 11300361
Alignment:
| Q |
18 |
tgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgcctt-----attccaaacgaaatcatgaga |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
11300576 |
tgaactccatctatttcctatgtccattctggcactatatatatgtgttttcactgaacagtttcatttgccttgccttattccaaacgaaatcctgaga |
11300477 |
T |
|
| Q |
113 |
aaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatctgtcatcat |
212 |
Q |
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| T |
11300476 |
aaatcaaaacttcacctccctatttcaagcatggccgattgttctctcactgcattgctctcctaccattgcctcacgggtatataacatacgtcatcat |
11300377 |
T |
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| Q |
213 |
tagaatgctttcccta |
228 |
Q |
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|||||||||||||||| |
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| T |
11300376 |
tagaatgctttcccta |
11300361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 37337880 - 37337935
Alignment:
| Q |
297 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcct |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37337880 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaactgcct |
37337935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 11300292 - 11300237
Alignment:
| Q |
297 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcct |
352 |
Q |
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| T |
11300292 |
gtaggacttttgagctgtaacccatccacagaattttacagaactatcaaccgcct |
11300237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 15296423 - 15296633
Alignment:
| Q |
18 |
tgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgccttattccaaacgaaatcatgagaaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15296423 |
tgaactccatctatttcctatgtccattctggcactatatctatgtgtttgcactgaacagtttcatttgccttattccaaacgaaatcatgagaaaatc |
15296522 |
T |
|
| Q |
118 |
aaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatctgtcatcattagaa |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15296523 |
aaaacttcacctccctatttcaagcatgttcgatcgtcctctcactgcatcgctctcctaccattgcctcacaggtatataacatctgtcatcattagaa |
15296622 |
T |
|
| Q |
218 |
tgctttcccta |
228 |
Q |
| |
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||||||||||| |
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| T |
15296623 |
tgctttcccta |
15296633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 15296724 - 15296765
Alignment:
| Q |
311 |
ccgtaacccatccacataattttacagaactatcaaccgcct |
352 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15296724 |
ccgtaacccatcaacataattttacagaactatcaaccgcct |
15296765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 47968392 - 47968274
Alignment:
| Q |
110 |
agaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatctgtcat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47968392 |
agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcggtgcattgctctcctaccattgcctcacaggtatataacatctgtcat |
47968293 |
T |
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| Q |
210 |
cattagaatgctttcccta |
228 |
Q |
| |
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|||||| |||| ||||||| |
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| T |
47968292 |
cattaggatgccttcccta |
47968274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 47968204 - 47968149
Alignment:
| Q |
297 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcct |
352 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47968204 |
gtaggacctttgagccgtaacccatccacataattttacagaactatcaaccgcct |
47968149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 44508948 - 44509072
Alignment:
| Q |
81 |
tcatttgccttattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacca |
180 |
Q |
| |
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|||| ||||||||||||||| |||| ||||| || |||||||||||||||| | |||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
44508948 |
tcatctgccttattccaaacaaaattccgagaacataaaaacttcacctccctgtatcaagcatggccgatcgtcctctcactgctttgctctcctacca |
44509047 |
T |
|
| Q |
181 |
ttgcctcacaggtatataacatctg |
205 |
Q |
| |
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||||||||||| |||||||| |||| |
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| T |
44509048 |
ttgcctcacagatatataacctctg |
44509072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 23828780 - 23828850
Alignment:
| Q |
119 |
aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcac |
189 |
Q |
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|||||| || |||||||||||||||||| | ||||||||| || |||||||||||||||| ||| ||||| |
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| T |
23828780 |
aaacttaacttccctatttcaagcatggccaatcgtcctcccaccgcattgctctcctacctttgtctcac |
23828850 |
T |
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Back To:
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Target: scaffold2134 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2134
Description:
Target: scaffold2134; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 128 - 188
Alignment:
| Q |
119 |
aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacc |
179 |
Q |
| |
|
|||||| || |||||||||||| ||||| |||||| ||||||| ||| |||||||||||| |
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|
| T |
128 |
aaactttacttccctatttcaaccatggacgatcgccctctcaccgcactgctctcctacc |
188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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