View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13248_low_7 (Length: 325)
Name: NF13248_low_7
Description: NF13248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13248_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33686132 - 33685964
Alignment:
| Q |
1 |
caaagacagtgatcatcaagtaaattaagaaaacataaaaacgaaaagggaaaatagatgtgaagtaatgagaataattatggaaatggatcttaagtca |
100 |
Q |
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| T |
33686132 |
caaagacagagatcatcaagtaaattaagaaaacataaaaaggaaaattgaaaataaatttgaagaaatgagaataattatggaaatggatcttaagtca |
33686033 |
T |
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| Q |
101 |
aaaaagcttaactgttagtgagcggaatatgagattgttaacttttatttcttttagtatatgattttg |
169 |
Q |
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| T |
33686032 |
aaaaagcttaactgttagtgagcggaatataagattgttaacttttatttcttttagtaaatgattttg |
33685964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 33685936 - 33685817
Alignment:
| Q |
197 |
tatttttgatttgagaaagaggttggtttgatgttgtttacggtggagagtggggatagagaagagagaagagtgtgaaaatatcttgtgttaagagtcc |
296 |
Q |
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| T |
33685936 |
tatttttgatttgagaaagaggttggtttgatgttgtttacggtggagagtggggatagagaagagagaagagtgtgaaaatatcttgtgttaagagtcc |
33685837 |
T |
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| Q |
297 |
atgataatactatattcttc |
316 |
Q |
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| T |
33685836 |
atgataatactatattcttc |
33685817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 19886235 - 19886307
Alignment:
| Q |
6 |
acagtgatcatcaagtaaattaagaaaacataaaaacgaaaagggaaaatagatgtgaagtaatgagaataat |
78 |
Q |
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| T |
19886235 |
acagagatcatcaagtaaattaagaaaacataaaaacgaaaattgaaaatagatctgaagaaatgagaataat |
19886307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4310791 - 4310882
Alignment:
| Q |
1 |
caaagacagtgatcatcaagtaaattaagaaaacataaaaacgaaaagggaaaatagatgtgaagtaatgagaataattatggaaatggatc |
92 |
Q |
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| T |
4310791 |
caaagacagggatcatcaaataaattaagaaaacataaaaacgaaaattgaaaatagatctgaagaaatgagaataatcatggaaatggatc |
4310882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 4311089 - 4311150
Alignment:
| Q |
241 |
ggagagtggggatagagaagagagaagagtgtgaaaatatcttgtgttaagagtccatgata |
302 |
Q |
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| T |
4311089 |
ggagagtggggatggaggattgagaagagtgtgaaaatatctaatgttaagagtccatgata |
4311150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 30486842 - 30486917
Alignment:
| Q |
241 |
ggagagtggggatagagaagagagaagagtgtgaaaatatcttgtgttaagagtccatgataatactatattcttc |
316 |
Q |
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| T |
30486842 |
ggagagtggggatggaggattgagaagagtgtgaaaatatctaatgttaagagtccatgatagtaccgtattcttc |
30486917 |
T |
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