View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_high_10 (Length: 291)
Name: NF13249_high_10
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 31556996 - 31557254
Alignment:
| Q |
20 |
ctctaacaccacttctcgaacaaaacaatattaaatgtccttaaattatgaaccccttactcatcattttctttaggtaaacatattttatatcctactt |
119 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
31556996 |
ctctaacaccacttctcgaacgaagcaatattaaatgtccttaaattacgaaccccttactcatccttttctttaggtaaacatattttatatcccactt |
31557095 |
T |
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| Q |
120 |
aatccaatgaattttacgagcttgaaaatttgcaccctat--nnnnnnnnccaactctaaaatagcatctacgagagctttg-nnnnnnnnnnnnnnnnn |
216 |
Q |
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|| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31557096 |
aaaccaatgaattttacgagcttgataatttgcaccctataaaaaaaaaaccaactctaaaatagcatctacgagagctttgaaaaaagaaaggaaaaaa |
31557195 |
T |
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| Q |
217 |
ntgagtaatgtagataatgaagattttaagagaactagacgatttcctgaagacatatt |
275 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31557196 |
atgagtaatgtagataaggaagattttaagagaactagacgatctcctgaagacatatt |
31557254 |
T |
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