View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_high_8 (Length: 377)
Name: NF13249_high_8
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 8358232 - 8357873
Alignment:
| Q |
1 |
cctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttcccaattagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8358232 |
cctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttcgcaattagtt |
8358133 |
T |
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| Q |
101 |
ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaacaacactatgaaaagaaaccactaataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358132 |
ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaacaacactatgaaaagaaaccactaataaag |
8358033 |
T |
|
| Q |
201 |
caataagaatagcagcatgtgatgtaataagagcaattcctccaactttcttgcaaacactaatcaatgttaatcttctttgaattttccttctctttga |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358032 |
caataagaatagcagcatgtgatgtaacaagagcaattcctccaactttcttgcaaacactaatcaatgttaatcttctttgaattttccttctctttga |
8357933 |
T |
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| Q |
301 |
tgttagtttttgaagaagttccatgtacctattgcgaatgtcatggaattgcattgtact |
360 |
Q |
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| T |
8357932 |
tgttagtttttgaagaagttccatgtacctattgcgaatgtcatggaattgcattgtact |
8357873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 28593341 - 28593712
Alignment:
| Q |
1 |
cctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttcccaattag-- |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |
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| T |
28593341 |
cctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgttcacatagtctttcacaataagaa |
28593440 |
T |
|
| Q |
99 |
-------tt---ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccactaacccaacaacactatgaaaagaaa |
188 |
Q |
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|| ||| |||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
28593441 |
cttcttcttaacctaattttgattttctttatgaacaaaccaaccaaactacctacaatacttggtgcagccactaaccctactacactatgaaaagaaa |
28593540 |
T |
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| Q |
189 |
ccactaataaagcaataagaatagcagcatgtgatgtaataagagcaattcctccaactttcttgcaaacactaatcaatgttaatcttctttgaatttt |
288 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
28593541 |
ccactaataaagcaataagaatggcaccatgtgatgtaacaagagcaattcctccaactttcttgcaaaccctaatcaatgctaatcttctttgaatttt |
28593640 |
T |
|
| Q |
289 |
ccttctctttgatgttagtttttgaagaagttccatgtacctattgcgaatgtcatggaattgcattgtact |
360 |
Q |
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| ||||||||||||||||| | ||||||||||| |||||||||||| |||| | || ||||||||||||||| |
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| T |
28593641 |
ctttctctttgatgttagtctatgaagaagttcaatgtacctattgtgaatattatcgaattgcattgtact |
28593712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 53447787 - 53447714
Alignment:
| Q |
17 |
ctcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttc |
90 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||||| ||||| |||| |
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| T |
53447787 |
ctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatagtttttc |
53447714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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