View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_1 (Length: 702)
Name: NF13249_low_1
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 14 - 684
Target Start/End: Original strand, 31998467 - 31999137
Alignment:
| Q |
14 |
agagggagatgtgacaaaggctccagctttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaa |
113 |
Q |
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| T |
31998467 |
agagggagatgtgacaaaggctccagttttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaa |
31998566 |
T |
|
| Q |
114 |
ctgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31998567 |
ctgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgtt |
31998666 |
T |
|
| Q |
214 |
aagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttg |
313 |
Q |
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| T |
31998667 |
aagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttg |
31998766 |
T |
|
| Q |
314 |
atataatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtttgtttttgtctaaccggcac |
413 |
Q |
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| T |
31998767 |
atataatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtttgtttttgtctaaccggcac |
31998866 |
T |
|
| Q |
414 |
atatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcaatcatcattagaattttagacgatttttaaatat |
513 |
Q |
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| T |
31998867 |
atatcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcgatcatcattagaattttagacgatttttaaatat |
31998966 |
T |
|
| Q |
514 |
agttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcc |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31998967 |
agttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcc |
31999066 |
T |
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| Q |
614 |
tagaaaactccacacaagagttgttacataaaccaattaggatcctacatgtaacaaggatagcgcctact |
684 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
31999067 |
tagaaaactccacacaagagttgttacataaaccaattaggctcctacatgcaacaagaatagcgcctact |
31999137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
162 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
261 |
Q |
| |
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|||||| | ||||||| | |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||| | || ||||||||||||||| |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
|
| Q |
262 |
aattgtggta |
271 |
Q |
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|| ||||||| |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 519 - 598
Target Start/End: Complemental strand, 17231961 - 17231882
Alignment:
| Q |
519 |
ttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
598 |
Q |
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||||||||||||||||||||||| ||| ||| | |||||| | || |||| |||||| || |||| |||||||||||||| |
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| T |
17231961 |
ttttacaagaggaaaactaattcctatcattgatgatcaagttattaatatatgttggaatatcataataaagatgagaa |
17231882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 530 - 598
Target Start/End: Original strand, 44773620 - 44773688
Alignment:
| Q |
530 |
gaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
598 |
Q |
| |
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|||||||||||||| | |||||| |||||| | |||||||||| | ||||||| |||||| ||||||| |
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| T |
44773620 |
gaaaactaattcatttcattaaaaatcaaacggtcaatacatgatagaacatcataataaatatgagaa |
44773688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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