View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13249_low_12 (Length: 260)

Name: NF13249_low_12
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13249_low_12
NF13249_low_12
[»] chr2 (2 HSPs)
chr2 (76-249)||(38950659-38950832)
chr2 (146-217)||(28296293-28296364)
[»] chr6 (3 HSPs)
chr6 (76-236)||(18331767-18331945)
chr6 (146-218)||(29280480-29280552)
chr6 (151-196)||(27766193-27766237)
[»] chr3 (1 HSPs)
chr3 (76-119)||(9461255-9461298)
[»] chr8 (1 HSPs)
chr8 (76-138)||(27513634-27513696)
[»] chr1 (1 HSPs)
chr1 (80-138)||(39210097-39210155)
[»] chr5 (1 HSPs)
chr5 (151-196)||(12871034-12871078)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 76 - 249
Target Start/End: Complemental strand, 38950832 - 38950659
Alignment:
Q  76 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtagtgtatcggaactttttcaactcaaaattattggtttt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38950832 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtagtgtatcggaactttttcaactcaaaattattggtttt 38950733  T
Q  176 tctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgtatagaaagagtatt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38950732 tctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgtatagaaagagtatt 38950659  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 28296364 - 28296293
Alignment:
Q  146 gaactttttcaactcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagat 217  Q
    |||||||||||| |||||| | ||||||||||| |||||||||||||| || |||| ||||| || ||||||    
T  28296364 gaactttttcaaatcaaaactgttggtttttctgttcatttgtgaaatattgaaccaacccatttgctagat 28296293  T

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Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 18331945 - 18331767
Alignment:
Q  76 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag------------------tgtatcggaactttttcaa 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||                  |||||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatatgatcaatcatttatgtatcggaactttttcaa 18331846  T
Q  158 ctcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgta 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18331845 ctcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgctgta 18331767  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 29280480 - 29280552
Alignment:
Q  146 gaactttttcaactcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagatt 218  Q
    |||||||||||| |||||||| || |||||||| |||||||||||||| || |||| ||||| || |||||||    
T  29280480 gaactttttcaaatcaaaattgttagtttttctgttcatttgtgaaatattgaaccaacccatttgctagatt 29280552  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 27766193 - 27766237
Alignment:
Q  151 ttttcaactcaaaattattggtttttctattcatttgtgaaatttt 196  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  27766193 ttttcaactcaaaatcattggtttttctatt-atttgtgaaatttt 27766237  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 9461255 - 9461298
Alignment:
Q  76 aattttgattgttttgacctaatttgaatatgattagattagat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9461255 aattttgattgttttgacctaatttgaatatgattagattagat 9461298  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 27513696 - 27513634
Alignment:
Q  76 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag 138  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||| | |||||||||||    
T  27513696 aattttgagtgttttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtag 27513634  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 39210097 - 39210155
Alignment:
Q  80 ttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag 138  Q
    |||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  39210097 ttgatttttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtag 39210155  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 12871034 - 12871078
Alignment:
Q  151 ttttcaactcaaaattattggtttttctattcatttgtgaaatttt 196  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  12871034 ttttcaactcaaaatcattggtttttctatt-atttgtgaaatttt 12871078  T

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