View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_13 (Length: 238)
Name: NF13249_low_13
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32147899 - 32148119
Alignment:
| Q |
1 |
ttttccatctattttaatagttttcacaccgatgaaatactcggctgaaggctcactctttgcgaaagcagctgtgctaaagggattgatcaaaagcggt |
100 |
Q |
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| T |
32147899 |
ttttccatctattttaatagttttcacgccgatgaaatactcggctgaaggctcactctttgcgaaagcagctgtgctaaagggattgatcaaaagcggt |
32147998 |
T |
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| Q |
101 |
gtgtatgtgagtgactttgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaaggcaaatag |
200 |
Q |
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| T |
32147999 |
gtgtatgtgagtgacttagaatcaaaaacgacgttggggagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaagacaaatag |
32148098 |
T |
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| Q |
201 |
cgaattttttagcaaagctaa |
221 |
Q |
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||||||||||||| ||||||| |
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| T |
32148099 |
cgaattttttagcgaagctaa |
32148119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32138506 - 32138729
Alignment:
| Q |
1 |
ttttccatctattttaatagttttcacaccgatgaaatactcggctgaaggctcactctttgcgaaagcag---ctgtgctaaagggattgatcaaaagc |
97 |
Q |
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|||| |||| ||||| || |||||||| ||||||||||||||||||||||||| || | || |||||||| ||||||||| ||||||||||||||| |
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| T |
32138506 |
tttttcatcgatttttattgttttcacgccgatgaaatactcggctgaaggctgaccttgtgagaaagcagaagctgtgctaacaggattgatcaaaagc |
32138605 |
T |
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| Q |
98 |
ggtgtgtatgtgagtgactttgaatcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaaggcaaa |
197 |
Q |
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| T |
32138606 |
ggtgtatatgtaagcgaatccgagtcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaagacaaa |
32138705 |
T |
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| Q |
198 |
tagcgaattttttagcaaagctaa |
221 |
Q |
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||||||||||| |||| ||||||| |
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| T |
32138706 |
tagcgaattttctagcgaagctaa |
32138729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 32126705 - 32126842
Alignment:
| Q |
1 |
ttttccatctattttaatagttttcacaccgatgaaatactcggctgaaggctcactctttgcgaaagc---agctgtgctaaagggattgatcaaaagc |
97 |
Q |
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||||||||| ||||| || |||||||| ||||||||||||||| |||||| ||| | || |||||| ||||||||||| ||||||| |||||| |
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| T |
32126705 |
ttttccatcaattttgattgttttcactccgatgaaatactcgactgaagactctccctgcaagaaagcggaagctgtgctaacatgattgattaaaagc |
32126804 |
T |
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| Q |
98 |
ggtgtgtatgtgagtgactttgaatcaaaaacaacgtt |
135 |
Q |
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|| |||||||||||||||||||||||||| |||||||| |
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| T |
32126805 |
ggcgtgtatgtgagtgactttgaatcaaatacaacgtt |
32126842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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