View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_2 (Length: 484)
Name: NF13249_low_2
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 73 - 471
Target Start/End: Original strand, 9698333 - 9698731
Alignment:
| Q |
73 |
caaaacaaacatggatgttgcagcatgtaattaaattcacatcttctcagttcttgagtcctggcgaatccccggagccctgtcaattggtgttgcagtg |
172 |
Q |
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| T |
9698333 |
caaaacaaacatggatgttgcagcatgtaattaaattcacatcttctcagttcttgagtcctggcgaatccccggagccctgtcatttggtgttgcagtg |
9698432 |
T |
|
| Q |
173 |
agttcactctctcttccatcctcacccgaaatctcttccaaagatcgtcccttagtttccgtcaccaagaacgtgcaaaagaatcctatcaaatttgtaa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9698433 |
agttcactctctcttccatcctcacccgaaatctcttccaaagatcgtcccttagtttccgtcaccaagaacgtgcaaaagaatcctatcaaatttgtaa |
9698532 |
T |
|
| Q |
273 |
aagccagaatcatcattgcgcgtctaatcttccttggcgtaccatccaacgtgtagtattgtatcccgaacgcaccaaccatagcacccgccttcccaga |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9698533 |
aagccagaatcatcattgcgcgtctaatcttccttggcgtaccatccaacgtgtagtattgtatcccgaacgcaccaaccatagcacccgccttcccaga |
9698632 |
T |
|
| Q |
373 |
tgcagcactgaaagcatggcatgttgacctcacccgcgtaggaaaaagctcagcgggcaacacaaaagttgtactattaggcccaaagttcgcgaagaa |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9698633 |
tgcagcactgaaagcatggcatgttgacctcacccgcgtaggaaaaagctcagcgggcaacacaaaagttgtactattaggcccaaagttcgcgaagaa |
9698731 |
T |
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