View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_3 (Length: 399)
Name: NF13249_low_3
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 32147841 - 32147448
Alignment:
| Q |
1 |
acaaagataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32147841 |
acaaagataagtaccgttgatccttacacagttttggaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataa |
32147742 |
T |
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| Q |
101 |
aaagggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtgcctactattgagctttatttgcagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32147741 |
aaagggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtacctactattgagctttatttgcagaa |
32147642 |
T |
|
| Q |
201 |
caatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatgaggttttgtgtcttggttttgtgattggtggtgagaatacatgggct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32147641 |
caatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatgaggttttgtgtcttggttttgtgattggtggtgagaatacatgggct |
32147542 |
T |
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| Q |
301 |
tcaattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgcttccaaagtgggatttagctccttgcgctttggac |
394 |
Q |
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| T |
32147541 |
tcaattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgcttctaaattgggatttagctccttgctctttggac |
32147448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 32138451 - 32138055
Alignment:
| Q |
1 |
acaaagataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataa |
100 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32138451 |
acaaagattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataa |
32138352 |
T |
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| Q |
101 |
aaagggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtgcctactattgagctttatttgcagaa |
200 |
Q |
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| T |
32138351 |
agagggtgggttcggttgcgccttttgaattttgttacactaatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaa |
32138252 |
T |
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| Q |
201 |
c---aatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatgaggttttgtgtcttggttttgtgattggtggtgagaatacatgg |
297 |
Q |
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| T |
32138251 |
tgaaaatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatgaagttttgtgtcttggatttgtgaatggtggtaagaatacaagg |
32138152 |
T |
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| Q |
298 |
gcttcaattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgcttccaaagtgggatttagctccttgcgctttggac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
32138151 |
acttcaattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgcttctaaattgggatttagctccttgctctttggac |
32138055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 32126650 - 32126286
Alignment:
| Q |
1 |
acaaagataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataa |
100 |
Q |
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|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
32126650 |
acaaagattagtacggttgatccttacacggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacataa |
32126551 |
T |
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| Q |
101 |
aaagggtggattcggttgcaccttttgagttttgttacact------aatgtgactgggacacgattgggtgcggatgtgcctactattgagctttattt |
194 |
Q |
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| T |
32126550 |
caacagaggattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcgtctgtgcctacaattgagcttctttt |
32126451 |
T |
|
| Q |
195 |
gcagaacaatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatgaggttttgtgtcttggttttgtgattggtggtgagaataca |
294 |
Q |
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|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||| | |
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| T |
32126450 |
acagaacaatgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatgaggttttgtgtcttggatttgttaacggtggtgtgaaccta |
32126351 |
T |
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| Q |
295 |
tgggcttcaattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgc |
359 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126350 |
aggacttctattgtgattggagggtatcagttggagaataatcttttgcaatttgatttggctgc |
32126286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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