View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_4 (Length: 383)
Name: NF13249_low_4
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 994134 - 994495
Alignment:
| Q |
14 |
aattctaacatctcactcatcttcatccacagtgaaatcagactctcctcctgctccctcaccagaatccgaaaccctagaattcaaatggggccaaaag |
113 |
Q |
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| T |
994134 |
aattctaacatctcactcatcttcatccacagtgaaatcaaactctcctcctgctccctcaccagaatccgaaaccctagaattcaaatggggccaaaag |
994233 |
T |
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| Q |
114 |
cgaggaaaaggcggtaaaaaacgtgatatacagttctaccaatcattcaccttacgtggtgttgattactcgctttttgataatgtttatgttaagaatg |
213 |
Q |
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| T |
994234 |
cgaggaaaaggcggtaaaaaacgtgatatacagttctaccaatcattcaccttacgtggtgttgattactcgctttttgataatgtttatgttaagaatg |
994333 |
T |
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| Q |
214 |
attttgctgaaccacgtattggtaagatcatcaagatatgggaaactcctactcttgaaaggaagattaaggttcaatggttctttcgtcctagtgaggt |
313 |
Q |
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| T |
994334 |
attttgctgaaccacgtattggtaagatcatcaagatatgggaaactcctactcttgaaaggaagattaaggttcaatggttctttcgtcctattgaggt |
994433 |
T |
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| Q |
314 |
ttcaaagtgtttgacttggattaagatttattttaatgaattgttctttgcttgtgatgatg |
375 |
Q |
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| T |
994434 |
ttcaaagtgtttgacttggattaagatttattttaatgaattgttctttgcttgtggtgatg |
994495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 1017956 - 1018037
Alignment:
| Q |
82 |
ccgaaaccctagaattcaaatggggccaaaagcgaggaaaaggcggtaaaaaacgtgatatacagttctaccaatcattcac |
163 |
Q |
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| T |
1017956 |
ccgaaaccctagaattcaaatggggtaaaaaacgcggcaaaggaggcaaaaaacgcgacacacaattctacgaatcattcac |
1018037 |
T |
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