View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13249_low_5 (Length: 382)
Name: NF13249_low_5
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_5 |
 | |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 38850874 - 38850507
Alignment:
| Q |
15 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850874 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
38850775 |
T |
|
| Q |
115 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850774 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
38850675 |
T |
|
| Q |
215 |
tttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
38850674 |
tttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcatgtgaattgttttgcacgcgttttaaatcag |
38850575 |
T |
|
| Q |
315 |
atagttgaagaagcgttaaaactagttagctgtggtgtgcataagatcagagagagtatcatgtttgt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38850574 |
atagttgaagaagcgttaaaactagttagctgtggtgtgcataagatcagagagagtatcatgtttgt |
38850507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 38313058 - 38313388
Alignment:
| Q |
11 |
taatactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||| |
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| T |
38313058 |
taatactactgagacttatatttgtttgactgctcatttcgttgatgcgaattggaagttaaatagtaaagttctcaacttctgtcttgtttaccctcct |
38313157 |
T |
|
| Q |
111 |
actagtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatg |
210 |
Q |
| |
|
||| | | ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
38313158 |
actggagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatg |
38313257 |
T |
|
| Q |
211 |
agattttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaa |
310 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| | ||||||||| |
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|
| T |
38313258 |
acattttgcaagaacaattaaaaaatcaactttgtttgcaaaatgggttgttatgtgatggagagttctttcatgtgcattgttttgcccgcgttttaaa |
38313357 |
T |
|
| Q |
311 |
tcagatagttgaagaagcgttaaaactagtt |
341 |
Q |
| |
|
| ||| ||||| |||| ||||||||||||| |
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|
| T |
38313358 |
cctgattgttgatgaagggttaaaactagtt |
38313388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 38316474 - 38316799
Alignment:
| Q |
18 |
actgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||| ||||||| | | |
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|
| T |
38316474 |
actgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctcctattgcag |
38316573 |
T |
|
| Q |
118 |
gggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagatttt |
217 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | || | |
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|
| T |
38316574 |
cggagatttcggagagaatgattgaattgttgaatgattggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttat |
38316673 |
T |
|
| Q |
218 |
gcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagata |
317 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||| | ||| |
|
|
| T |
38316674 |
gctagaacaattgaaaaatcaactttgtttgcgaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcatgcgttttaaaactgatt |
38316773 |
T |
|
| Q |
318 |
gttgaagaagcgttaaaactagttag |
343 |
Q |
| |
|
| |||||| | ||||||||||||||| |
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|
| T |
38316774 |
gctgaagaggggttaaaactagttag |
38316799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 38320569 - 38320894
Alignment:
| Q |
15 |
actactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctacta |
114 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||| ||| || |||| |||| ||| |
|
|
| T |
38320569 |
actaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatccc---actg |
38320665 |
T |
|
| Q |
115 |
gtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagat |
214 |
Q |
| |
|
| | ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || |
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|
| T |
38320666 |
gagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaatgacat |
38320765 |
T |
|
| Q |
215 |
tttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcag |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| | | |||||| ||||| |||||||| | |
|
|
| T |
38320766 |
tttgcaagaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggggagttctttcacgggcattgttatgcacgtgttttaaaattg |
38320865 |
T |
|
| Q |
315 |
atagttgaagaagcgttaaaactagttag |
343 |
Q |
| |
|
|| |||||||| | ||| ||||||||||| |
|
|
| T |
38320866 |
attgttgaagaggggttgaaactagttag |
38320894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 38299828 - 38300149
Alignment:
| Q |
19 |
ctgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtgg |
118 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||| || || || |
|
|
| T |
38299828 |
ctgagacttatatctgtttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgtcttgttttacccactgtatctg- |
38299926 |
T |
|
| Q |
119 |
ggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttg |
218 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| | ||||| | |||||| |
|
|
| T |
38299927 |
--agatgtgtgagagaatggttgagttcttgaatgattggggaatagaggaaaagattttctctctcactttagaagattcatttaagaataaaattttg |
38300024 |
T |
|
| Q |
219 |
caagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatag |
318 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||| ||||| ||||||||||| || |||||||||| | | |||||||||||| | ||||||| | ||| | |
|
|
| T |
38300025 |
caagaaaaatttcaaaatcaacttgttttgcataatgggttgttatgtgacggggagttctttcacgggcattgttttgcacgcattttaaaactgattg |
38300124 |
T |
|
| Q |
319 |
ttgaagaagcgttaaaactagttag |
343 |
Q |
| |
|
||||||| | ||| ||||||||||| |
|
|
| T |
38300125 |
ttgaagaggggttgaaactagttag |
38300149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 38305747 - 38306068
Alignment:
| Q |
19 |
ctgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtgg |
118 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| || |||||| || ||| | |
|
|
| T |
38305747 |
ctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtgttgttttaccc---actgtagc |
38305843 |
T |
|
| Q |
119 |
ggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttg |
218 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | | || || |||| | || | | |||||| |
|
|
| T |
38305844 |
cgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttg |
38305943 |
T |
|
| Q |
219 |
caagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatag |
318 |
Q |
| |
|
|||||||| |||||| |||| |||| |||| ||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| | ||| | |
|
|
| T |
38305944 |
caagaacagttgaaatctcatcttggtttggaaaatggtttgttatgtgatggagagttctttcacaggcattgttctgcacgcgttttaaaactgattg |
38306043 |
T |
|
| Q |
319 |
ttgaagaagcgttaaaactagttag |
343 |
Q |
| |
|
||||||| | ||||||||||||||| |
|
|
| T |
38306044 |
ttgaagaggggttaaaactagttag |
38306068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 38325326 - 38325644
Alignment:
| Q |
25 |
cttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctactagtggggagat |
124 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||| || ||| ||| |||| ||||| |
|
|
| T |
38325326 |
cttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaatttctgtagtgtctaccctgacactggtggtgagat |
38325425 |
T |
|
| Q |
125 |
ttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaa |
224 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| | || | |||||| |
|
|
| T |
38325426 |
gtgtgaaagaatgattgaattgttgaatgattggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaa |
38325525 |
T |
|
| Q |
225 |
caattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaag |
324 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| ||||| ||||||||||||||||||| | | | |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
38325526 |
caattgaaatctcatcttggtttgcaaaatgggttgttgtgtgatggagagttctttcacgggcactgttttgcacgtgttttaaatctgattgttgaag |
38325625 |
T |
|
| Q |
325 |
aagcgttaaaactagttag |
343 |
Q |
| |
|
| | ||| ||||||||||| |
|
|
| T |
38325626 |
acgggttgaaactagttag |
38325644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 38308475 - 38308835
Alignment:
| Q |
14 |
tactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctact |
113 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||| ||||||||| |
|
|
| T |
38308475 |
tactactggcacttatatttgtttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgtcttgttttccctcctact |
38308574 |
T |
|
| Q |
114 |
agtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgaga |
213 |
Q |
| |
|
| | | || |||||||||||||||| |||||||||||| |||||||||||||||| || | ||| | |||||||||| ||||||| | |
|
|
| T |
38308575 |
ggagcctatatgtgtgagagaatggttg--------aatgattggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatg |
38308666 |
T |
|
| Q |
214 |
ttttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatca |
313 |
Q |
| |
|
|| ||||| |||||||||| |||||||||| |||| ||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||| | |
|
|
| T |
38308667 |
ttctgcaacaacaattgaagactcaacttggtttggaaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcacatgttttaaaact |
38308766 |
T |
|
| Q |
314 |
gatagttgaagaagcgttaaaactagttagctgtggtgtgcataagatcagagagagtatcatgtttgt |
382 |
Q |
| |
|
||| |||||||| | || ||||||||||| ||| ||| ||||||| ||| |||| ||||||||||| |
|
|
| T |
38308767 |
gattgttgaagaggggtgtaaactagttagtggtgccgtgtataagattagaaagagcatcatgtttgt |
38308835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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