View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_6 (Length: 380)
Name: NF13249_low_6
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 560975 - 560625
Alignment:
| Q |
14 |
agattgaaatgtgaaagtaaaatgcaggtacttatggtttatctaaatttttgctctgtttaagttatatcacatcgtgtatgtattttgatgttgaaat |
113 |
Q |
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| T |
560975 |
agattgaaatgtgaaagtaaaatgcaggtacttatggtttatctaaatttttgctctgtttaagttatatcacatcgtgtatgtattttgatgttgaaat |
560876 |
T |
|
| Q |
114 |
aacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaaggaagaacaaaaccggatgcttaa |
213 |
Q |
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| T |
560875 |
aacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaaggaagaacaaaaccggatgcttaa |
560776 |
T |
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| Q |
214 |
gttgtctctggtgattgaaaatattatttttaaagacttagttatggttgtagaactttgacagtgacaaattcactttactgatcacctccaagatttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
560775 |
gttgtctctggtgattgaaaatattatttttaaagacttagttatggttgtagaactttgacagtgacaaattcactttactgatcacctccaagacttt |
560676 |
T |
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| Q |
314 |
gttcttgttttcttttatgtattttggtttggatgctcatggattattatg |
364 |
Q |
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| T |
560675 |
gttcttgttttcttttatgtattttggtttggatgctcatggattattatg |
560625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 348
Target Start/End: Original strand, 8580770 - 8581047
Alignment:
| Q |
90 |
gtgtatgtattttgatgttgaaata--acacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagct |
187 |
Q |
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| T |
8580770 |
gtgtttgtattttgatgttaaaatataacatgactgtttttttattataggttaaattcagtcacccttcttgtccgaaaattgacattgaaagaaagct |
8580869 |
T |
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| Q |
188 |
aaggaagaacaa---------------aaccggatgcttaagttgtctctg--gtgattgaaaatattatttttaaagacttagttatggttgtagaact |
270 |
Q |
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| T |
8580870 |
aaggaagaacaagttatttgcagatgaaaccggatgctcaagttgtctctcttgtgatggaaaatatgatttttgaagatttagttatggttgtagaact |
8580969 |
T |
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| Q |
271 |
ttgacagtgacaaattcactttactgatcacctccaagattttgttcttgttttcttttatgtattttggtttggatg |
348 |
Q |
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| T |
8580970 |
ttgaaagtgagaactttgctttagtgacaaccatcatgattttgttcttgttttattttatggattttggtttggatg |
8581047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 8576849 - 8576919
Alignment:
| Q |
90 |
gtgtatgtattttgatgttgaaataacacgactgttttttcattataggtcaaattgaatcgcccttcttgt |
161 |
Q |
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| T |
8576849 |
gtgtatgtattttgatgttgaaataacacaactgcatttt-gttagaggtcaaattgaatcacctttcttgt |
8576919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 36224159 - 36224053
Alignment:
| Q |
90 |
gtgtatgtattttgatgttgaaataacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaa |
189 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||| | |||||||||| || |||||||| |||| | |||||||| |
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| T |
36224159 |
gtgtttgtattttgatgttgaaataacatgactgtttttt-attataggttaaacatagcaacccttcttgttctaaaattgacgttgaaagaaagctaa |
36224061 |
T |
|
| Q |
190 |
ggaagaac |
197 |
Q |
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|||||||| |
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| T |
36224060 |
ggaagaac |
36224053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 39427371 - 39427268
Alignment:
| Q |
95 |
tgtattttgatgttgaaataacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaaggaag |
194 |
Q |
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|||||| ||||||||||||||||| ||| ||||| ||||||||| ||| ||| || | ||||||||| ||||||| ||| | | ||||||||||||| |
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| T |
39427371 |
tgtattatgatgttgaaataacacagctg-tttttaattataggttaaaatgagtcactgttcttgtcccaaaattgaaatttaaagaaagctaaggaag |
39427273 |
T |
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| Q |
195 |
aacaa |
199 |
Q |
| |
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|||| |
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| T |
39427272 |
tacaa |
39427268 |
T |
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