View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13249_low_7 (Length: 378)
Name: NF13249_low_7
Description: NF13249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13249_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 32248397 - 32248767
Alignment:
| Q |
1 |
atatcataaaggatggctacacagatggaatccaggtcatgacaatcaagatcattgtgtatttgaaaatacctatgtagtttttgaagcatttatgtaa |
100 |
Q |
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| T |
32248397 |
atatcataaaggatggctacacagatggaatccaggtcatgacaatcgagatcattgtgtattcgaaaataccaatgtagtttttgaagcatttatgtaa |
32248496 |
T |
|
| Q |
101 |
ctgtaatttctcgctgcaaacatattattataacattatattttcctgtattattatgttaaatcattcttcaaatgttggaccnnnnnnnnaaaacaaa |
200 |
Q |
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| T |
32248497 |
ctgtaatttctcgctgcaaacatattattataacattatattttcctgtattattatgttaaatcattcttcaaatgttggaccttttttttaaaacaaa |
32248596 |
T |
|
| Q |
201 |
tgttacatgttggaaaatatctgttcataccaccaaaacagaattacaataatttataacaagagcatcccaagttaataattaaaaacaaattatcaat |
300 |
Q |
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| T |
32248597 |
tgttacatgttggaaaatatctgttcataccaccaaaacagaattacaataatttataacaagagcatcccaagttaataattaaaaacaaattatcaat |
32248696 |
T |
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| Q |
301 |
ctgcaatgaaaattaatttctcttatacaattgctccttttctgcagttcctgctgctactacggcctttg |
371 |
Q |
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| T |
32248697 |
ctgcaatgaaaattaatttctcttatacaattgctccttttctgcagttcctgctgctactacagcctttg |
32248767 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2488840 - 2488799
Alignment:
| Q |
16 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
57 |
Q |
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| T |
2488840 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
2488799 |
T |
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