View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1324_high_12 (Length: 311)

Name: NF1324_high_12
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1324_high_12
NF1324_high_12
[»] chr1 (2 HSPs)
chr1 (2-298)||(22773283-22773579)
chr1 (2-298)||(26081462-26081758)
[»] chr2 (1 HSPs)
chr2 (2-298)||(40067564-40067860)
[»] scaffold0179 (1 HSPs)
scaffold0179 (2-189)||(21651-21837)
[»] chr4 (2 HSPs)
chr4 (186-298)||(51269782-51269894)
chr4 (235-298)||(15856188-15856251)
[»] chr8 (1 HSPs)
chr8 (67-173)||(37704339-37704445)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 22773283 - 22773579
Alignment:
Q  2 agataaatcaaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacgatgaagagtaattacaatctctta 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22773283 agataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacaatgaagagtaattacaatctctta 22773382  T
Q  102 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22773383 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 22773482  T
Q  202 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22773483 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattatcatgcatatcttc 22773579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 26081462 - 26081758
Alignment:
Q  2 agataaatcaaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacgatgaagagtaattacaatctctta 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26081462 agataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacaatgaagagtaattacaatctctta 26081561  T
Q  102 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26081562 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 26081661  T
Q  202 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  26081662 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattataatgcatatcttc 26081758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 40067860 - 40067564
Alignment:
Q  2 agataaatcaaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacgatgaagagtaattacaatctctta 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40067860 agataaatcaaaatacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacaatgaagagtaattacaatctctta 40067761  T
Q  102 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40067760 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaataacagactcta 40067661  T
Q  202 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatcttc 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  40067660 atgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattatgatgcatatcttc 40067564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 21651 - 21837
Alignment:
Q  2 agataaatcaaattacatttaattcaaactcttagctcatcgtaatgaagattaattacaatcttcaatcttcacgatgaagagtaattacaatctctta 101  Q
    |||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  21651 agataaatcaaaatacatttaattaaaa-tcttagatcatcgcaatgaagattaattacaatcttaaatcttcacaatgaagagtaattataatctctta 21749  T
Q  102 aatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagcacatttctttaagcaccaagaaaa 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  21750 aatttcctttgacacttcataaaatgaacaacaattagctcatcgctcatacatcaactctagcacatttccttaaacaccaagaaaa 21837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 51269782 - 51269894
Alignment:
Q  186 aaaataacagactctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcggatataatctcatgaatgtatgacataatactgatccaaattat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  51269782 aaaataacagactctaatgctcaaaaacaaatctgaatcaaaaccaacaaatggcagatataatctcatgaatggatgacataatactgatccaaattat 51269881  T
Q  286 catgcatatcttc 298  Q
    |||||||||||||    
T  51269882 catgcatatcttc 51269894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 15856188 - 15856251
Alignment:
Q  235 aatggcggatataatctcatgaatgtatgacataatactgatccaaattatcatgcatatcttc 298  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15856188 aatggcagatataatctcatgaatggatgacataatactgatccaaattatcatgcatatcttc 15856251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 37704445 - 37704339
Alignment:
Q  67 caatcttcacgatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattagctcatcgctcatacatcaactctagca 166  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||    
T  37704445 caatcttcacaatgaagagtaattacaatctcttaaatttcctttgacacttcataaaatgcacaacaattatctcatcactcatacatcaactcttgca 37704346  T
Q  167 catttct 173  Q
    |||||||    
T  37704345 catttct 37704339  T

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