View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1324_high_2 (Length: 756)
Name: NF1324_high_2
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 710
Target Start/End: Original strand, 36526688 - 36527383
Alignment:
| Q |
13 |
gagaaaattagctatggagtttttacttatagaagcacattgtgagacatgagagattnnnnnnngtgaaaaataatatgtactctacattgaagatcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526688 |
gagaaaattagctatggagtttttacttatagaagcacattgtgagacatgagagattaaaaaaagtgaaaaataatatgtactctacattgaagatcaa |
36526787 |
T |
|
| Q |
113 |
caagacaatctatgcagtattttcatttgatgtctctaataagttattttttcgataaattatcagttaatataacccttcaaatacgaacaaaggtgta |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526788 |
caagacaatctatgcagcattttcatttgatgtctctaataagttattttttcgataaattatcagttaatataacccttcaaatacgaacaaaggtgta |
36526887 |
T |
|
| Q |
213 |
ttttttcttaaagtgcattacaaatttacaatgaaagttacaatttataatgaaagctttttaaaagtggcgcagtaaattagttagttgtcccttagac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526888 |
ttttttcttaaagtgcattacaaatttacaatgaaagttacaatttataatgaaagctttttaaaagtggcgcagtaaattagttagttgtcccttagac |
36526987 |
T |
|
| Q |
313 |
aacctgaagtttgaaatcctatgaagaaacaaagagatgatgcattggaattttgattgttggctattgc--atcaaagatactgatattgaattgaata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36526988 |
aacctgaagtttgaaatcctatgaagaaacaaagagatgatgcattggaattttgattgttggctattgcatatcaaagatactgatattgaattgaata |
36527087 |
T |
|
| Q |
411 |
gtaatattttgcatgggaaaaacagcaattgaaatatgttaaaactgctaattacatgtaaatattttgggaggccgtaagatttgtaaaatttaaaaat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36527088 |
gtaatattttgcatgggaaaaacagcaattgaaatatgttaaaactgctaattacatgtaaatattttgggaggccgtaagatttgtaaaatttaaaaat |
36527187 |
T |
|
| Q |
511 |
tatcgtattaataaatgaatagtagtagttaatagatgctcccnnnnnnnnntaatgctattttaagaagtcaagttttgaagaagctttccattagatg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36527188 |
tatcgtattaataaatgaatagtagtagttaatagatgctcccaaaaaaaaataatgctattttaagaagtcaagttttgaagaagttttccattagatg |
36527287 |
T |
|
| Q |
611 |
ataaatgacaaacttgtcataaatgaaactatattgtatttttatnnnnnnnncaatttggtcttgtatttgtataaattgttaaacctaatagataaaa |
710 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
36527288 |
agaaatgacaaacttgtcataaatgaaactatattgtatttgta---aaaaaaaaaattggtcttgtatttg-ataaattgttaaacctaaaagataaaa |
36527383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 756
Target Start/End: Original strand, 36527884 - 36527914
Alignment:
| Q |
726 |
tatggaccttacatatcaacatcacaaattc |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36527884 |
tatggaccttacatatcaacatcacaaattc |
36527914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University