View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1324_high_8 (Length: 358)
Name: NF1324_high_8
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_high_8 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 10994875 - 10995221
Alignment:
| Q |
12 |
agctgttgcaacatttaaggtataaagttatagtattctatgtcactcatgcactcttcagaattaatttcggcttatctaaaatgaatacatttccaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10994875 |
agctgttgcaacatttaaggtataaagttatagtattctatgtcactcatgcactcttcagaattaattttggcttatctaaaatgaatacatttccaac |
10994974 |
T |
|
| Q |
112 |
tactaattgtgaatgcaatttgtagcgctcctctataaaaagaagactattcttcttcttttagctctatgcaagtaggattttatcttcatcagcaact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10994975 |
tactaattgtgaatgcaatttgtagcgctcctctataaaaagaagactattcttcttcttttagctctatgcaagtaggattttatcttcatcagcaact |
10995074 |
T |
|
| Q |
212 |
tgatacaagcagttttatgggggtgtctcgctgtaccgagtctctgatgtgaaggagatgaagcaggctgattctagttcaagagcgatttctaaatctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995075 |
tgatacaagcagttttatgggggtgtctcgctgtaccgagtctctgatgtgaaggagatgaagcaggctgattctagttcaagagcgatttctaaatctt |
10995174 |
T |
|
| Q |
312 |
ctagtgattgttgtctcatttgttagataataagattgggcttatgt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995175 |
ctagtgattgttgtctcatttgttagataataagattgggcttatgt |
10995221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 10999105 - 10999213
Alignment:
| Q |
23 |
catttaaggtataaagttatagtattctatgtcactcatgcactcttcagaattaatttcggcttatctaaaatgaatacatttccaactactaattgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||| |
|
|
| T |
10999105 |
catttaaggtataaagttatagtattctatgtcattcatgcactcgaaagaattaatttcggc-tatctaaaatgaatacatttccaactactgagtgtg |
10999203 |
T |
|
| Q |
123 |
aatgcaattt |
132 |
Q |
| |
|
|||||||||| |
|
|
| T |
10999204 |
aatgcaattt |
10999213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 11000533 - 11000616
Alignment:
| Q |
275 |
caggctgattctagttcaagagcgatttctaaatcttctagtgattgttgtctcatttgttagataataagattgggcttatgt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11000533 |
caggctgattctagttcaagagcgatttttaaatcttctagtgattgttgtctaatttgttagataataagattgggcttatgt |
11000616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University