View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_10 (Length: 396)
Name: NF1324_low_10
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 36528069 - 36527884
Alignment:
| Q |
1 |
aaatacaccctttgttggtattcgaagggtattattaaccaataatttatttactgaaagaattagccaataatttgttgaaaaattactaattggaggt |
100 |
Q |
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| T |
36528069 |
aaatacaccctttgttggtattcgaagggtattattaaccaataatttattttctgaaagaatcagccaataatttgttgaaaaattacttattggaggt |
36527970 |
T |
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| Q |
101 |
atcaaatgaaaatgaaatcaacttagtttctctatactgtcgaatcctcatgatggaatttgtgatgttgatatgtaaggtccata |
186 |
Q |
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| T |
36527969 |
atcaaatgaaaatgaaatcaacttagtttctctatactgtcgaatcctcatgatggaatttgtgatgttgatatgtaaggtccata |
36527884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 36527328 - 36527202
Alignment:
| Q |
261 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcatta--nnnnnnngg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36527328 |
aaatacaatatagtttcatttatgacaagtttgtcatttctcatctaatggaaaacttcttcaaaacttgacttcttaaaatagcattatttttttttgg |
36527229 |
T |
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| Q |
359 |
gagcatctattaactactactattcat |
385 |
Q |
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| T |
36527228 |
gagcatctattaactactactattcat |
36527202 |
T |
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