View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_11 (Length: 382)
Name: NF1324_low_11
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 567737 - 567553
Alignment:
| Q |
134 |
acgaagaaaaggtgaaacaaaaacacgatgaagtggataaccgaaaagattacgaaacttgcgagctgtacagaaagcacgaacacgaccttcttgaacg |
233 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
567737 |
acgaataaaaggtgaaacaaaaacacgatgaagtggataaccgaaaagattacgaaacttgcgagctgtacagaaagcacgaacacgaccttcttcaacg |
567638 |
T |
|
| Q |
234 |
agaggtgggtcccatggtcgtggtgctgttgatatccataatggatcgaagttgtcgatgcgatctccatgtctcattacgatta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
567637 |
agaggtgggtcccatggtcgtggtgctgttgatatccataatggatcgaagttgtctatgcgatctccatgtctcattacgatta |
567553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 931521 - 931418
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
931521 |
gattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgc |
931422 |
T |
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| Q |
109 |
ttcc |
112 |
Q |
| |
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|||| |
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| T |
931421 |
ttcc |
931418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 10607770 - 10607873
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
10607770 |
gattatactactggatttgttcatttgtattccatgttccatgttccttcatggatccacttgttccccactctttcttcccaattgccgcagctgatgc |
10607869 |
T |
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| Q |
109 |
ttcc |
112 |
Q |
| |
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|||| |
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| T |
10607870 |
ttcc |
10607873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 12589654 - 12589757
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
12589654 |
gattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgc |
12589753 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
|
|
| T |
12589754 |
ttcc |
12589757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 46764849 - 46764746
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
46764849 |
gattatactactggatttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgc |
46764750 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
|
|
| T |
46764749 |
ttcc |
46764746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 11680941 - 11680838
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
11680941 |
gattatactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgc |
11680842 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
|
|
| T |
11680841 |
ttcc |
11680838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 11689220 - 11689117
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
11689220 |
gattatactatttgatttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgc |
11689121 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
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|||| |
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|
| T |
11689120 |
ttcc |
11689117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 25655091 - 25655193
Alignment:
| Q |
9 |
gattatactactggatttgttcatttgtattccatgtcccatgttccttcacgggtccacttgttccccactctttcttccttattgtcgcagctgatgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| |
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| T |
25655091 |
gattatactactggatttgttcatttgtattccatgttcca-gttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgc |
25655189 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
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|
| T |
25655190 |
ttcc |
25655193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 4371130 - 4371181
Alignment:
| Q |
61 |
gggtccacttgttccccactctttcttccttattgtcgcagctgatgcttcc |
112 |
Q |
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|||||||| |||||||||||||||||||| |||| |||||||||||||||| |
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| T |
4371130 |
gggtccacctgttccccactctttcttcccaattgccgcagctgatgcttcc |
4371181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 4363327 - 4363355
Alignment:
| Q |
61 |
gggtccacttgttccccactctttcttcc |
89 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4363327 |
gggtccacttgttccccactctttcttcc |
4363355 |
T |
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