View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1324_low_12 (Length: 368)

Name: NF1324_low_12
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1324_low_12
NF1324_low_12
[»] chr3 (16 HSPs)
chr3 (3-288)||(22353959-22354246)
chr3 (1-339)||(22630584-22630923)
chr3 (1-338)||(22468094-22468431)
chr3 (1-339)||(22442885-22443223)
chr3 (1-296)||(22358148-22358443)
chr3 (1-302)||(22635649-22635950)
chr3 (1-302)||(22368073-22368359)
chr3 (207-338)||(22632217-22632348)
chr3 (84-297)||(22436863-22437076)
chr3 (172-338)||(22431469-22431634)
chr3 (1-78)||(22431319-22431396)
chr3 (173-282)||(22458807-22458916)
chr3 (173-282)||(22481788-22481897)
chr3 (1-80)||(22458635-22458714)
chr3 (1-80)||(22481616-22481695)
chr3 (215-263)||(21945682-21945730)
[»] chr8 (1 HSPs)
chr8 (215-263)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 22353959 - 22354246
Alignment:
Q  3 atcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctttc 102  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22353959 atcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctttc 22354058  T
Q  103 cttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattc--atacatgacaatcaaagttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |  |||||| |||||||||||||||    
T  22354059 cttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctatgttgtatggtcgagataccgtgatccatatacataacaatcaaagttctt 22354158  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatct 288  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22354159 aactaccttttggttgtcaaaaacttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatct 22354246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 22630584 - 22630923
Alignment:
Q  1 tcatcaaacactacaa-cgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatct 99  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22630584 tcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttgatggagactttgaggaggatct 22630683  T
Q  100 ttccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttct 199  Q
    |||| | |||||||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| | |||||||| ||| |||||||||||||||  |    
T  22630684 ttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtt 22630783  T
Q  200 taactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctc 299  Q
    |||| |||||| |||||||||||| |||  |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  22630784 taacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctc 22630883  T
Q  300 tacaagccaattaatcagtttctatcgtggctcttcaaag 339  Q
    ||  ||||||| ||||| ||| | ||||||||| ||||||    
T  22630884 tatcagccaatcaatcaatttgtctcgtggctcgtcaaag 22630923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 22468094 - 22468431
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctt 100  Q
    ||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22468094 tcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgatggagactctgaggaggatctt 22468193  T
Q  101 tccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttctt 200  Q
     || | ||||||||||||| || |||||||| |||||||||| ||||||| | |||||||||||| | |||||||| ||||||||||||||||| |  ||    
T  22468194 ccccttgttgtttgtaaatatcgagcaaaatttccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgttt 22468293  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctct 300  Q
    ||| |||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  22468294 aacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctct 22468393  T
Q  301 acaagccaattaatcagtttctatcgtggctcttcaaa 338  Q
    || | | ||| ||||| ||| | |||||||||||||||    
T  22468394 accaacaaatcaatcaatttgtctcgtggctcttcaaa 22468431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 22442885 - 22443223
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctt 100  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||    
T  22442885 tcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgaggaggaactt 22442984  T
Q  101 tccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttctt 200  Q
    ||||| |||||||||||| ||| |||| |||||||||||||||||||||  | ||| ||| | || | ||| |||| |||| | |||| ||||||| |||    
T  22442985 tcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttcaatattgaatgattgagacaccatgatccataaaagacagtcaaagtgctt 22443084  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctct 300  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  22443085 aactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccattccaacaatggagacaactgtgcggtcttctcttccctct 22443184  T
Q  301 acaagccaattaatcagtttctatcgtggctcttcaaag 339  Q
    || | | ||| ||||| ||| | || |||||||||||||    
T  22443185 accaacaaatcaatcaatttgtctcttggctcttcaaag 22443223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 22358148 - 22358443
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctt 100  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||    
T  22358148 tcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgacggagactctgaggaggaactt 22358247  T
Q  101 tccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttctt 200  Q
    ||||| |||||||||||| ||| |||| |||||||||||||||||||||| | |||||||||||| | ||||| || |||||| ||| ||||||||  ||    
T  22358248 tcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttt 22358347  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttcc 296  Q
     || |||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  22358348 tacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgtccggtctgctcttcc 22358443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22635649 - 22635950
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctt 100  Q
    ||||||||||||| |||  ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  22635649 tcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgatggagactctcaggaggaactt 22635748  T
Q  101 tccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttctt 200  Q
     || | |||||||||||| ||| |||| |||||| | ||||||||||||| | |||||||||||| | ||||| || |||||| ||||||||||||  ||    
T  22635749 ccccttgttgtttgtaaaactcgagcataatgtctcgcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaagtattt 22635848  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctct 300  Q
     || |||||| ||||||||||||||||  | |||||||||||||||||  |||||||||||||||  |||||||||| ||| || |||||||||||| ||    
T  22635849 tacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattccaaagatggagacaattgtccggtctgctcttcccgct 22635948  T
Q  301 ac 302  Q
    ||    
T  22635949 ac 22635950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22368073 - 22368359
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctt 100  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||| ||||| |||||||||  ||    
T  22368073 tcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacatt 22368172  T
Q  101 tccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcatacatgacaatcaaagttctt 200  Q
    ||| | ||||               ||  |||||| ||| || ||||||||| || ||||||||| | |||||||| |||| | ||||||||||||  ||    
T  22368173 tcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgttt 22368257  T
Q  201 aactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctct 300  Q
    ||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  22368258 aacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcggtgtgctcttccctct 22368357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 207 - 338
Target Start/End: Original strand, 22632217 - 22632348
Alignment:
Q  207 cttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcgatctgctcttccctctacaagc 306  Q
    |||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  22632217 ctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttccctctaccagc 22632316  T
Q  307 caattaatcagtttctatcgtggctcttcaaa 338  Q
    |||||||| ||||||| |  ||||||||||||    
T  22632317 caattaattagtttctctattggctcttcaaa 22632348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 84 - 297
Target Start/End: Original strand, 22436863 - 22437076
Alignment:
Q  84 actctgaggaggatctttccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctttgttgtatggtcgaaataccgtgattcataca 183  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||  |||||| | || | || ||||| ||||||    
T  22436863 actctgaggaggatctttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccataca 22436962  T
Q  184 tgacaatcaaagttcttaactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgc 283  Q
    ||||| ||||| |  || |  || ||   ||| |||||||||||  |||| ||||| ||||||||  | ||||||||||| ||||| ||||||||||  |    
T  22436963 tgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccctcccattcctacaatagagacaactgcac 22437062  T
Q  284 gatctgctcttccc 297  Q
    | ||| ||||||||    
T  22437063 gctctactcttccc 22437076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 338
Target Start/End: Original strand, 22431469 - 22431634
Alignment:
Q  172 gtgattcatacatgacaatcaaagttcttaactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatgg 271  Q
    ||||| |||| | ||||||||||||  ||||  ||| | | |||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||    
T  22431469 gtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctcccattcc-acaatgg 22431567  T
Q  272 agacaactgtgcgatctgctcttccctctacaagccaattaatcagtttctatcgtggctcttcaaa 338  Q
    |||| |||||| | ||| || |||| | ||| ||||||| ||||| | | | || ||||||||||||    
T  22431568 agaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaa 22431634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22431319 - 22431396
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttga 78  Q
    |||||||||||||||||| |||||||||||||||||| |||||||| || ||||| ||||   |||||||||||||||    
T  22431319 tcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 22431396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 22458807 - 22458916
Alignment:
Q  173 tgattcatacatgacaatcaaagttcttaactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatgga 272  Q
    |||| |||||||||||||||||||  ||||| | ||| | || ||||||||| ||  | || ||||| ||||||||  |||||||| ||||||||||||     
T  22458807 tgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggt 22458906  T
Q  273 gacaactgtg 282  Q
    ||||| ||||    
T  22458907 gacaattgtg 22458916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 22481788 - 22481897
Alignment:
Q  173 tgattcatacatgacaatcaaagttcttaactaccttttggttgtcaaaaacttttatggctagagtggtttttcccagtcctcccattccaacaatgga 272  Q
    |||| |||||||||||||||||||  ||||| | ||| | || ||||||||| ||  | || ||||| ||||||||  |||||||| ||||||||||||     
T  22481788 tgatccatacatgacaatcaaagtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggt 22481887  T
Q  273 gacaactgtg 282  Q
    ||||| ||||    
T  22481888 gacaattgtg 22481897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22458635 - 22458714
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatg 80  Q
    |||||||| |||| |||  |||||||| | ||||||| ||| |||||||||||||| |||| || ||||| |||||||||    
T  22458635 tcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatg 22458714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22481616 - 22481695
Alignment:
Q  1 tcatcaaacactacaacgcacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatg 80  Q
    |||||||| |||| |||  |||||||| | ||||||| ||| |||||||||||||| |||| || ||||| |||||||||    
T  22481616 tcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatg 22481695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 21945730 - 21945682
Alignment:
Q  215 tgtcaaaaacttttatggctagagtggtttttcccagtcctcccattcc 263  Q
    |||||||||||||  |||||||||||||||||||  | |||||||||||    
T  21945730 tgtcaaaaactttcttggctagagtggtttttccttgccctcccattcc 21945682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  215 tgtcaaaaacttttatggctagagtggtttttcccagtcctcccattcc 263  Q
    |||||||||||||  || ||||||||||||||||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

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