View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1324_low_22 (Length: 300)

Name: NF1324_low_22
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1324_low_22
NF1324_low_22
[»] chr5 (10 HSPs)
chr5 (132-200)||(14242501-14242569)
chr5 (132-196)||(14370756-14370820)
chr5 (25-66)||(14242394-14242435)
chr5 (25-69)||(14370883-14370927)
chr5 (132-198)||(41453522-41453588)
chr5 (25-66)||(41440252-41440293)
chr5 (222-252)||(14242591-14242621)
chr5 (222-252)||(14370700-14370730)
chr5 (25-66)||(41453415-41453456)
chr5 (132-200)||(41440359-41440427)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 14242501 - 14242569
Alignment:
Q  132 gctctaaagaagaatgaaagctttctttttctttgacctgagctcaagaaaaagaagaaccctttgtgg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14242501 gctctaaagaagaatgaaaactttctttttctttgacctgagctcaagaaaaagaagaaccctttgtgg 14242569  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 14370820 - 14370756
Alignment:
Q  132 gctctaaagaagaatgaaagctttctttttctttgacctgagctcaagaaaaagaagaacccttt 196  Q
    ||||||||||||||||||| ||||||||||||||||||| | || |||||||| |||||||||||    
T  14370820 gctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaacccttt 14370756  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 14242394 - 14242435
Alignment:
Q  25 catcagaaaccatgcattgaaccgttaactcaatgtgatttt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14242394 catcagaaaccatgcattgaaccgttaactcaatgtgatttt 14242435  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 14370927 - 14370883
Alignment:
Q  25 catcagaaaccatgcattgaaccgttaactcaatgtgattttgat 69  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||    
T  14370927 catcagaaatcatgcagtgaaccgttaactcaatgtgattttgat 14370883  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 41453522 - 41453588
Alignment:
Q  132 gctctaaagaagaatgaaagctttctttttctttgacctgagctcaagaaaaagaagaaccctttgt 198  Q
    |||||||| ||||||| || | ||||||||||||||||||| || |||||||| || ||||||||||    
T  41453522 gctctaaaaaagaatggaaaccttctttttctttgacctgaactgaagaaaaacaaaaaccctttgt 41453588  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 41440252 - 41440293
Alignment:
Q  25 catcagaaaccatgcattgaaccgttaactcaatgtgatttt 66  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  41440252 catcagaaaccaagcattgaactgttaactcaatgtgatttt 41440293  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 14242591 - 14242621
Alignment:
Q  222 caagtaactgttttgagagctaaatcaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  14242591 caagtaactgttttgagagctaaatcaaaaa 14242621  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 14370730 - 14370700
Alignment:
Q  222 caagtaactgttttgagagctaaatcaaaaa 252  Q
    |||||||||||||||||||||||||||||||    
T  14370730 caagtaactgttttgagagctaaatcaaaaa 14370700  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 41453415 - 41453456
Alignment:
Q  25 catcagaaaccatgcattgaaccgttaactcaatgtgatttt 66  Q
    |||||||||||| ||||||||| |||||||| ||||||||||    
T  41453415 catcagaaaccaagcattgaactgttaactcgatgtgatttt 41453456  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 41440359 - 41440427
Alignment:
Q  132 gctctaaagaagaatgaaagctttctttttctttgacctgagctcaagaaaaagaagaaccctttgtgg 200  Q
    |||||||  ||||||| || | ||||| |||||||| |||| || |||||||| |||||||||||||||    
T  41440359 gctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctttgtgg 41440427  T

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