View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_24 (Length: 283)
Name: NF1324_low_24
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 10995379 - 10995632
Alignment:
| Q |
1 |
gagggagttcatcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995379 |
gagggagttcatcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaaa |
10995478 |
T |
|
| Q |
101 |
agaaatttgataacttgatttccacatgttaaatcttcttgacagttaattaccgtggctattgttgttccaacaacaaagtaaaccatcaacaacaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995479 |
agaaatttgataacttgatttccacatgttaaatcttcttgacagttaattaccgtggctattgttgttccaacaacaaagtaaaccatcaacaacaaca |
10995578 |
T |
|
| Q |
201 |
atcccataacataatagcaagtattcattatcttgattcttatgaaatagtaat |
254 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10995579 |
atcccataacataatagcaagtgttcattatcttgattcttatgaaatagtaat |
10995632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 11001030 - 11001275
Alignment:
| Q |
11 |
atcatagtttcattatttgatgaacaaaataactcaaagccagggtagccaca--caaagatggatttggattgtggtttttgatatggaaaagaaattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||| ||| | ||||| |
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| T |
11001030 |
atcatagtttcattatttgatgaacaaaataactcaaagccaggatagccatatacaaagatggatttggattgtgatttttgatatgaaaagggaattt |
11001129 |
T |
|
| Q |
109 |
gataacttgatttccacatgttaaatcttcttgacagttaattaccgtggctattgttgttccaacaacaaagtaaaccatcaacaacaacaatcccata |
208 |
Q |
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| T |
11001130 |
gataacttgatttccacatgttaaatcttcttgacaattaattaccgtggctgttgttgttccaacaacaaagtaaaccatcaacaacaacaatcccaaa |
11001229 |
T |
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| Q |
209 |
acataatagcaagtattcattatcttgattcttatgaaatagtaat |
254 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11001230 |
acataatagcaagtgttcattatcttgattcttatgaaatagtaat |
11001275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10929062 - 10928841
Alignment:
| Q |
1 |
gagggagttca-tcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaa |
99 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| ||||| || || ||||| || ||||||||||||||||||||||||||||| || || |
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| T |
10929062 |
gagggagttcaatcatagtttccttatttgatgaacaaaataaatcaaaacctggatagccgcagaaagatggatttggattgtggtttttgatttgaaa |
10928963 |
T |
|
| Q |
100 |
aagaaatttgataacttgatttccacatgttaaatcttcttgacagttaattac------cgtggctattgttgttccaacaacaaagtaaaccatcaac |
193 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||| |||||||||||||||||| ||||| ||| ||| |
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| T |
10928962 |
aggaaatttgataacttgatttccacatgttaaatcttctggacagttattttctgtgggcgtggctgttgttgttccaacaacaatgtaaaacatgaac |
10928863 |
T |
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| Q |
194 |
aacaacaatcccataacataat |
215 |
Q |
| |
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||||| ||| |||||||||||| |
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| T |
10928862 |
aacaagaatgccataacataat |
10928841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 11039675 - 11039549
Alignment:
| Q |
11 |
atcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaaaagaaatttga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||| |||||||||||||||||| | ||||||| |
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| T |
11039675 |
atcatagtttcattatttgatgaacaaaataactcaaaatctggatagccatgcaaagatggatttggattttggtttttgatatggaaagggaatttga |
11039576 |
T |
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| Q |
111 |
taacttgatttccacatgttaaatctt |
137 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11039575 |
taacttgatttccacatgttaaatctt |
11039549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 10906556 - 10906361
Alignment:
| Q |
1 |
gagggagttca-tcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaa |
99 |
Q |
| |
|
||||||||||| |||| ||||| ||||| |||||||||||||||||||| || || |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
10906556 |
gagggagttcaatcattgtttcgttattcgatgaacaaaataactcaaaacctggatagccatacgaagatggatttggattgtggtttttgatatggaa |
10906457 |
T |
|
| Q |
100 |
aagaaatttgataacttgatttccacatgttaaatcttcttgacagttaattaccgtggctattgttgttccaacaacaaagtaaaccatcaacaacaa |
198 |
Q |
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| | ||||| ||||||||||||||||||||||||||| | | | ||| | ||| ||||| | ||||||| ||||||||| |||||||| |||||||| |
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| T |
10906456 |
agggaatttaataacttgatttccacatgttaaatctgc---agaattattgaccatggctgtagttgttctaacaacaaaataaaccataaacaacaa |
10906361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 10990160 - 10989956
Alignment:
| Q |
11 |
atcatagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgtggtttttgatatggaaaagaaatttg- |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
10990160 |
atcatagtttcattatttgatgaacaaaataactcaaaatctggatagccatacaaagatggatttggattttggtttttgatatggaaagggaatttga |
10990061 |
T |
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| Q |
110 |
--ataacttgatttccacatgttaaatcttcttgacagttaattaccgtggctattgttgttccaacaacaaagtaaaccatcaacaacaacaatcccat |
207 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || | | | | ||| ||||| | ||||||| |||||||||||||||||| ||||| || || |||| |
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| T |
10990060 |
taataacttgatttccacatcttaaa---tctggagaatcattgaccatggctgtagttgttctaacaacaaagtaaaccatgaacaaaaataaagccat |
10989964 |
T |
|
| Q |
208 |
aacataat |
215 |
Q |
| |
|
|||||||| |
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|
| T |
10989963 |
aacataat |
10989956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 11024607 - 11024483
Alignment:
| Q |
14 |
atagtttcattatttgatgaacaaaataactcaaagccagggtagccacacaaagatggatttggattgt-ggtttttgatatggaaaagaaatttgata |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || | |||||||||| ||| | ||||| |||||||||| ||||| | || |||||| |
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| T |
11024607 |
atagtttcattatttgatgtacaaaataactcaaatcctgaatagccacaca----tgggt---gattgacggtttttgattcggaaagggaacttgata |
11024515 |
T |
|
| Q |
113 |
acttgatttccacatgttaaatcttcttgaca |
144 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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|
| T |
11024514 |
acttgatttccacatgttaaatcttctggaca |
11024483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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