View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1324_low_3 (Length: 668)

Name: NF1324_low_3
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1324_low_3
NF1324_low_3
[»] chr5 (3 HSPs)
chr5 (46-639)||(35913217-35913807)
chr5 (79-144)||(9715745-9715809)
chr5 (59-99)||(28009847-28009887)
[»] chr1 (3 HSPs)
chr1 (66-129)||(34181829-34181892)
chr1 (66-121)||(15013546-15013601)
chr1 (66-98)||(36332631-36332663)
[»] chr7 (4 HSPs)
chr7 (59-133)||(29780161-29780235)
chr7 (59-121)||(32018133-32018195)
chr7 (59-99)||(8681898-8681938)
chr7 (66-98)||(21557037-21557069)
[»] chr6 (5 HSPs)
chr6 (66-98)||(12268820-12268852)
chr6 (66-98)||(5613402-5613434)
chr6 (65-121)||(19753632-19753688)
chr6 (66-98)||(28149814-28149846)
chr6 (309-349)||(29256451-29256491)
[»] chr3 (3 HSPs)
chr3 (259-329)||(50338411-50338486)
chr3 (59-133)||(44145137-44145211)
chr3 (305-349)||(43101380-43101424)
[»] chr2 (2 HSPs)
chr2 (59-98)||(23054340-23054379)
chr2 (59-97)||(4772820-4772858)
[»] chr8 (1 HSPs)
chr8 (69-129)||(41371184-41371242)


Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 46 - 639
Target Start/End: Original strand, 35913217 - 35913807
Alignment:
Q  46 ctcaagtcttgatacatcatatagatataactcttgataagagtttataaagaaaagacatttctcacattacaagttgattttataatagtgagttaga 145  Q
    ||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||    
T  35913217 ctcaagtct-gatacatcagatggatataactcgtgataagagtttataaagaaaagacatttatcatattataagctgattttataatagtgagttaga 35913315  T
Q  146 cataatcaacatgatatcaaagcatatcgatcagactgcccactatatacatacacgcacccgcaccacaccaaaccaaagaatgctagctaggcgtgag 245  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35913316 cataatcaacatgatatcaaagcatatcgatcagactgcacactatttacatacacgcacccgcaccacaccaaaccaaagaatgctagctaggtgtgag 35913415  T
Q  246 agggtgtactggg-aaaactcaagcctcatatcaaatatataagattcttgataagagttagaggagacactcatcaccttacaaatcatttttgtaagg 344  Q
    |||||||| |||| |||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  35913416 agggtgtattgggaaaaactcaagtctcatatcgaatatataagactctttataagagttagaggagacactcatcaccttataagtcatttttgtaagg 35913515  T
Q  345 atgagaaagttatccttatccaccctgactcgtggtcggccatcatatctttggtatgtccaaagtcgactgtttgctcggttggtgaaacttaagtgac 444  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35913516 atgagaaagttatccttatccaccctaactcgtggttggccatcatatcttcggtatgtccaaagtcgactgtttgctcggttggtgaaacttaagtgac 35913615  T
Q  445 tgcaaaaaagnnnnnnnnnatcagattgtctaaagttaaaaccctaaactttaatgtaaccataacttactagcatttgcctattcgtaccttnnnnnnn 544  Q
    ||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  35913616 tgcaaaaaag---ttttttaccagattgtctaaagttaaaaccctaaactttaatgtaaccataacttactagcatttgcctattcgtaccttaaaaaaa 35913712  T
Q  545 ncatgtccctgttaaaataaacaaaacgaagttagaaaatatattcagcatattggtagaaaattaaacaacatgcatctcgaaaatgaatcttc 639  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35913713 acatgtccctgttaaaataaacaaaacgaagttagaaaatatattcagcatattggtagaaaattaaacaacatgcatctcgaaaatgaatcttc 35913807  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 9715745 - 9715809
Alignment:
Q  79 ttgataagagtttataaagaaaagacatttctcacattacaagttgattttataatagtgagttag 144  Q
    |||||||||||||||||||| || | ||||||||| |||||| | |||||||||| | ||||||||    
T  9715745 ttgataagagtttataaagataa-aaatttctcaccttacaaatcgattttataaaaatgagttag 9715809  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 28009887 - 28009847
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaagaa 99  Q
    |||||| ||||||| ||||||||| ||||||||||||||||    
T  28009887 acatcagatagatagaactcttgagaagagtttataaagaa 28009847  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 34181892 - 34181829
Alignment:
Q  66 atagatataactcttgataagagtttataaagaaaagacatttctcacattacaagttgatttt 129  Q
    ||||||||||||||| |||| |||||||||| |  ||||||||||||| ||||||||| |||||    
T  34181892 atagatataactcttaataaaagtttataaaaatgagacatttctcactttacaagttaatttt 34181829  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 15013546 - 15013601
Alignment:
Q  66 atagatataactcttgataagagtttataaagaaaagacatttctcacattacaag 121  Q
    |||||||| |||||||| || |||||||||||| |||||| ||||||| |||||||    
T  15013546 atagatatgactcttgagaacagtttataaagagaagacacttctcaccttacaag 15013601  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 36332631 - 36332663
Alignment:
Q  66 atagatataactcttgataagagtttataaaga 98  Q
    ||||||| |||||||||||||||||||||||||    
T  36332631 atagatagaactcttgataagagtttataaaga 36332663  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 29780161 - 29780235
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaagaaaagacatttctcacattacaagttgattttataa 133  Q
    |||||| |||||||| |||||||| |||||||||||||||  ||||| | ||||| |||||||| | ||||||||    
T  29780161 acatcaaatagatatgactcttgagaagagtttataaagaggagacactcctcaccttacaagtcggttttataa 29780235  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 32018195 - 32018133
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaagaaaagacatttctcacattacaag 121  Q
    |||||| |||||||| |||||||||||||||||||||| |  ||||| | ||||| |||||||    
T  32018195 acatcaaatagatatgactcttgataagagtttataaacatgagacactcctcaccttacaag 32018133  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 8681898 - 8681938
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaagaa 99  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  8681898 acatcagatagataagactcttgataagagtttataaagaa 8681938  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 21557037 - 21557069
Alignment:
Q  66 atagatataactcttgataagagtttataaaga 98  Q
    ||||||| |||||||||||||||||||||||||    
T  21557037 atagatagaactcttgataagagtttataaaga 21557069  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 12268820 - 12268852
Alignment:
Q  66 atagatataactcttgataagagtttataaaga 98  Q
    |||||||||||||||||||||||||||||||||    
T  12268820 atagatataactcttgataagagtttataaaga 12268852  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 5613434 - 5613402
Alignment:
Q  66 atagatataactcttgataagagtttataaaga 98  Q
    |||||||||| ||||||||||||||||||||||    
T  5613434 atagatataattcttgataagagtttataaaga 5613402  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 19753688 - 19753632
Alignment:
Q  65 tatagatataactcttgataagagtttataaagaaaagacatttctcacattacaag 121  Q
    ||||||||  |||||||| ||||||||||||||| |||||| | ||||| |||||||    
T  19753688 tatagataggactcttgagaagagtttataaagagaagacactcctcaccttacaag 19753632  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 28149814 - 28149846
Alignment:
Q  66 atagatataactcttgataagagtttataaaga 98  Q
    ||||||| |||||||||||||||||||||||||    
T  28149814 atagataaaactcttgataagagtttataaaga 28149846  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 29256491 - 29256451
Alignment:
Q  309 gagacactcatcaccttacaaatcatttttgtaaggatgag 349  Q
    |||||| || ||||||||||||||| |||||||||||||||    
T  29256491 gagacaatcctcaccttacaaatcagttttgtaaggatgag 29256451  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 50338486 - 50338411
Alignment:
Q  259 aaaactcaagcctcatatcaaatatataagattcttgataagagt-----tagaggagacactcatcaccttacaa 329  Q
    |||||||||| ||||||||| ||| |||||| |||||||||||||     ||||||||||| || |||||||||||    
T  50338486 aaaactcaagtctcatatcagatagataagactcttgataagagtttatatagaggagacaatcttcaccttacaa 50338411  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 44145211 - 44145137
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaagaaaagacatttctcacattacaagttgattttataa 133  Q
    |||||| |||||||  ||||||||||| ||||||||||||  ||||| | ||||| ||| |||||| ||||||||    
T  44145211 acatcagatagataagactcttgataatagtttataaagaggagacaatactcaccttataagttggttttataa 44145137  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 43101424 - 43101380
Alignment:
Q  305 agaggagacactcatcaccttacaaatcatttttgtaaggatgag 349  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||||    
T  43101424 agaggaggcactcctcaccttacaaatcggttttgtaaggatgag 43101380  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 23054340 - 23054379
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaaga 98  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  23054340 acatcagatagatataactcttgagaagagtttataaaga 23054379  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 4772858 - 4772820
Alignment:
Q  59 acatcatatagatataactcttgataagagtttataaag 97  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  4772858 acatcagatagatatgactcttgataagagtttataaag 4772820  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 41371242 - 41371184
Alignment:
Q  69 gatataactcttgataagagtttataaagaaaagacatttctcacattacaagttgatttt 129  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||| ||||||  |||||||    
T  41371242 gatagaactcttgataagagtttataaag--aagacattcctcaccttacaaactgatttt 41371184  T

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