View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1324_low_35 (Length: 251)

Name: NF1324_low_35
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1324_low_35
NF1324_low_35
[»] chr1 (4 HSPs)
chr1 (13-243)||(33888116-33888338)
chr1 (13-243)||(33955911-33956133)
chr1 (31-243)||(33888528-33888736)
chr1 (31-243)||(33955514-33955722)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 33888338 - 33888116
Alignment:
Q  13 aatataaggagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatag 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    ||||||||||||    
T  33888338 aatataagaagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgtcaaacttaatacttcaatcgagt----cattcaaaatag 33888243  T
Q  113 tgtttggttgtggttttaccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatctaaaaacttttgcttctgatttagatcggtgtg 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||    
T  33888242 tgtttggttgtggttttaccaaaaacaatctccatcacttactcgtgatctgccatgacccaacatctaaaaac----gcttctgattttgatcggtgtg 33888147  T
Q  213 atagagaataaatgttaatatccatataagg 243  Q
    |||||||||| ||||||||||||||||||||    
T  33888146 atagagaatagatgttaatatccatataagg 33888116  T

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Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 33955911 - 33956133
Alignment:
Q  13 aatataaggagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatag 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    ||||||||||||    
T  33955911 aatataagaagaacaacttgaataaaactacgatacggagtaactgctggagctaatttgtcaaacttaatacttcaatcgagt----cattcaaaatag 33956006  T
Q  113 tgtttggttgtggttttaccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatctaaaaacttttgcttctgatttagatcggtgtg 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||    
T  33956007 tgtttggttgtggttttaccaaaaacaatctccatcacttactcgtgatctgccatgacccaacatctaaaaac----gcttctgattttgatcggtgtg 33956102  T
Q  213 atagagaataaatgttaatatccatataagg 243  Q
    |||||||||| ||||||||||||||||||||    
T  33956103 atagagaatagatgttaatatccatataagg 33956133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 33888736 - 33888528
Alignment:
Q  31 tgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatagtgtttggttgtggtttta 130  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  33888736 tgaataaaactacgatacgatgtaactgctagagctaatttgccaaacctaatacttcaatcgagt----cattcaaaatagtgtttggttgtggtttta 33888641  T
Q  131 ccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatctaaaaacttttgcttctgatttagatcggtgtgatagagaataaatgttaa 230  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||||||| || ||||    
T  33888640 ccaaaaacaatctccatcacttagtcgtgatctgccatgacccagcatctaaaaactctcacttctgatttagatcggtgtgatagagaatagatattaa 33888541  T
Q  231 tatccatataagg 243  Q
    |||||||||||||    
T  33888540 tatccatataagg 33888528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 33955514 - 33955722
Alignment:
Q  31 tgaataaaactacgatacggagtaactgctggagctaatttgccaaacctaatacttcaatcgagttattcattcaaaatagtgtttggttgtggtttta 130  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  33955514 tgaataaaactacgatacgatgtaactgctagagctaatttgccaaacctaatacttcaatcgagt----cattcaaaatagtgtttggttgtggtttta 33955609  T
Q  131 ccaaaaacaatctccatcatttactcgtgatctgccatgacccaacatctaaaaacttttgcttctgatttagatcggtgtgatagagaataaatgttaa 230  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||||||| || ||||    
T  33955610 ccaaaaacaatctccatcacttagtcgtgatctgccatgacccagcatctaaaaactctcacttctgatttagatcggtgtgatagagaatagatattaa 33955709  T
Q  231 tatccatataagg 243  Q
    |||||||||||||    
T  33955710 tatccatataagg 33955722  T

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