View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_37 (Length: 250)
Name: NF1324_low_37
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 8280353 - 8280274
Alignment:
| Q |
119 |
ccaattcgccgtccacactttttcttcgttcaccctcgttgtccgccgccaccaccaccgtcgcatagtcactgtatttt |
198 |
Q |
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| T |
8280353 |
ccaattcaccgtccacactttttcttcattcaccctcgttgtccgccgccgccaccaccgtcgcatagtcactgtatttt |
8280274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 30441501 - 30441610
Alignment:
| Q |
119 |
ccaattcgccgtccacactttttcttcgttcaccctcgttg---tccgccgccaccaccaccgtcgcata--gtcactgtattttcatactttctgctcc |
213 |
Q |
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| T |
30441501 |
ccaattcaccgtccacacttttccttcattcaccctcattggccgccgccgccaccaccaccgtcgcatattgtcactgtattttcgtactttctgctcc |
30441600 |
T |
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| Q |
214 |
tttttctttt |
223 |
Q |
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|||||||||| |
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| T |
30441601 |
tttttctttt |
30441610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 13058231 - 13058131
Alignment:
| Q |
119 |
ccaattcgccgtccacactttttcttcgttcaccctcgttgtccgccgccaccaccaccgtcgcatagtcactgtattttcatactttctgctccttttt |
218 |
Q |
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||||||| | |||||||||||| |||| ||||||||| || ||||||||||| |||| || |||||| |||||||||||||||||||||||||| |
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| T |
13058231 |
ccaattcacggtccacacttttccttcattcaccctcactggccgccgccaccgccacat----attgtcactctattttcatactttctgctccttttt |
13058136 |
T |
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| Q |
219 |
ctttt |
223 |
Q |
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||||| |
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| T |
13058135 |
ctttt |
13058131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 26995244 - 26995129
Alignment:
| Q |
119 |
ccaattcgccgtccacactttttcttcgttcaccctcgttgtccgccgccaccaccaccgtcgcatagt--cactgtattttcatactttctgctccttt |
216 |
Q |
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||||||| |||||||||||||| ||| |||||| || | | |||||||||||||||||| |||| |||| ||||||||||||||||| | |||| |
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| T |
26995244 |
ccaattcaccgtccacacttttctttcattcaccttcatcggtagccgccaccaccaccgtcacatatctccactatattttcatactttctgtttcttt |
26995145 |
T |
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| Q |
217 |
ttcttttaatttctct |
232 |
Q |
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|||||||||||||||| |
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| T |
26995144 |
ttcttttaatttctct |
26995129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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