View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_7 (Length: 438)
Name: NF1324_low_7
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 31 - 438
Target Start/End: Original strand, 9980802 - 9981199
Alignment:
| Q |
31 |
cacaaagaacaaagtaaaggttatctagagaatactttagaggtgcaaaggaatttaccaagcaagtgctttaaatgaactttgaggttgaagatgacag |
130 |
Q |
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| T |
9980802 |
cacaaagaacaaattaaaggttatctagagaatactttagaggtgcaaaggaatttaccaagcaagtgctttaaatgaactttgaggttgaagatgacag |
9980901 |
T |
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| Q |
131 |
aaagagaaagagannnnnnnttctttaatgtgttattgaggttattgataagaatataaagtacaaaatgaaaaggagtgataaatgaggtaggttgaga |
230 |
Q |
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| T |
9980902 |
aaagagaaagagagggggggttctttaatgtgtta---------ttgataagaatataaagtacaaaatgaaaaagagtgataaatgaggtaggttgaga |
9980992 |
T |
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| Q |
231 |
atgaagataatgaagtgtgcaagaatgaggaaaaatgatagaggaagaaaaataggagaaggaagcagaaagataatatagaggaaagtgtggtatgata |
330 |
Q |
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| T |
9980993 |
atgaagataatgaagtgtgcaagaatgaggaaaaatgatagaggaagaaaaataggagaaggaagcagaaagataatatagaggaaagtgtggtatgata |
9981092 |
T |
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| Q |
331 |
aggaaggaagggctgagattcaatggtcagaaatcatagattggcattttatggcagcttgcttataacaggttaagtatcaatttgcagggtatatcat |
430 |
Q |
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| T |
9981093 |
aggaaggaagggctgagattcaatggtcag-aatcatagattggcattttatggcagcttgcttataacaggttaagtatcaatttgcagggtatatcat |
9981191 |
T |
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