View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_8 (Length: 424)
Name: NF1324_low_8
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 75 - 424
Target Start/End: Original strand, 22362328 - 22362677
Alignment:
| Q |
75 |
tccaacaatatgcatttcggaaatcaggttttctatcataaagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttt |
174 |
Q |
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| T |
22362328 |
tccaaccatatgcatttcggaaatcaggttttctatcatagagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttt |
22362427 |
T |
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| Q |
175 |
tcctaatacatttttcatgagctttctccatgaccaacttgtttgcttctcctcttcctcttcttcttgtctttgtaccaatgtcttaaggtgttgcact |
274 |
Q |
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| T |
22362428 |
tcctaatacatttttcatgagcttcctccatgaccaacttgtttgcttctcctcttcctcttcttcttgtctttgtaccaatgtcttaaggtgttgcact |
22362527 |
T |
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| Q |
275 |
ttgttattcttcttcagttcaaggaatttggtccatagactaggagaatgagaatcatcatcaatgaacacaattggaccatcttgtttcttggtgaaaa |
374 |
Q |
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| T |
22362528 |
ttgtcattcttcttcagttcaaggaatttggtccatagactaggagaatgagaatcatcatcaatgaacacaattggaccatcttgtttcttggtgaaga |
22362627 |
T |
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| Q |
375 |
ttctctctatcattgctcttgattcctataagtgataattaataataata |
424 |
Q |
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| T |
22362628 |
ttctctctatctttgttcttgattcctataagtggtaattaacaataata |
22362677 |
T |
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