View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1324_low_9 (Length: 420)
Name: NF1324_low_9
Description: NF1324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1324_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 33836003 - 33835610
Alignment:
| Q |
13 |
aatatacagtgaaaggatttatatatctaatgtattaacatattaggttacgatgcgatgtctaattccatttgtgtagttgctcaaaacttaatgtgtt |
112 |
Q |
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| T |
33836003 |
aatatacagtgaaatgatttatatatctaatgtattaacatattaggttacgatgcgatgtctaattccatttgtgtagttgctcaaaacttaatgtgtt |
33835904 |
T |
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| Q |
113 |
tgtccccataatctgaattttatgttcaatgtgcagggatgtatcatttgcttagtcttagcttttgggtgggcttcagctgcatgtgtcaggtactcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835903 |
tgtccccataatctgaattttatgttcaatgtgcagggatgtatcatttgcttagtcttagcttttgggtgggcttcagctgcatgtgtcaggtactcat |
33835804 |
T |
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| Q |
213 |
tgattatgaagcactgacacagacacaaatacatacaccatacacaacactagacaccataatagtttaagaagacaaaagtgattggatgtaaccacat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835803 |
tgattatgaagcactgacacagacacaaatacatacaccatacacgacactagacaccataatagtttaagaagacaaaagtgattggatgtaaccacat |
33835704 |
T |
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| Q |
313 |
atgtcgacattaaacaccgacacatgacggatattccctaaatccgaggtgttggtgttacatagcgcattaatatcaaacaaagtaaagaaac |
406 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835703 |
atgtcgacattaaacaccgacacatgacggacattccctaaatccgaggtgttggtgttacatagcgcattaatatcaaacaaagtaaagaaac |
33835610 |
T |
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