View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13250_high_2 (Length: 640)
Name: NF13250_high_2
Description: NF13250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13250_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 16 - 630
Target Start/End: Complemental strand, 30545675 - 30545068
Alignment:
| Q |
16 |
caatagcatagagtactaatgaaacttagtgctaaagaaacatactatttgcaaacacagattacaacaataacattgtgcaagagtttttcctcttatt |
115 |
Q |
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| T |
30545675 |
caatagcagagagtactaatgaaacctagtactaaagaaacatactatttgcaaacacagattacaacaataacattgtgcaagagtttttcctcttatt |
30545576 |
T |
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| Q |
116 |
tgttcttatctaggggcaaggcagttcattctttcatggaaatcagtgcatattttgctactgtgttataatctctcttttctgtttctgtcaacaaagg |
215 |
Q |
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| T |
30545575 |
tgttcttatctaggggcaaggcagttcattctttcatggaaatcagtgcatattttgctactgtgttataatctctcttttctgt------caacaaagg |
30545482 |
T |
|
| Q |
216 |
ataatgccctaccaattaactgtctgactgcagcttagtgcagtgtaaactgacaataaaatcatctgaaaacaatttcgtcagcaacgtgcacagtccc |
315 |
Q |
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| T |
30545481 |
atgatgccctaccaattaactgtctgactgcagcttagtgcagtgtaaactgacaataaaatcatctgaaaacaatttcgtcagcaacgtgcacagtccc |
30545382 |
T |
|
| Q |
316 |
atctgtcgaaaggccgcatcatagcccttttcctcacttatcaagccccataagagttgagatgtgaaaatagagaaaaacatgagacagacaaaattga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30545381 |
atctgtcgaaaggccgcatcatagcccttttcctcacttatcaagccccataagagttgagatgtgaaaatagag-aaaacatgagacagacaaaattga |
30545283 |
T |
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| Q |
416 |
gaggatccatttccacaaggatccaagctcatgtgtcttatttccttcaagagaaaggtctttcaaagtcttaagcaacataacattttctcatgattca |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30545282 |
gaggatccatttccacaaggatccaagctcatgtgtcttatttccttcaagagaaaggtctttcaaagtcttaagcaacataacattttctcaagattca |
30545183 |
T |
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| Q |
516 |
acactccaaaacaagtatnnnnnnntaacaataggcagcattctactaatacgatcttatcaacatgttgaacacttgtaatttgatagataccttaaat |
615 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545182 |
acactccaaaacaagtataaaaaaataacaataggcagcattctactaatacgatcttatcaacatgttgaacacttgtaatttgatagataccttaaat |
30545083 |
T |
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| Q |
616 |
aaaccattctctctg |
630 |
Q |
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||||||||||||||| |
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| T |
30545082 |
aaaccattctctctg |
30545068 |
T |
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