View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13250_low_3 (Length: 392)
Name: NF13250_low_3
Description: NF13250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13250_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 33543598 - 33543238
Alignment:
| Q |
15 |
ctgtgttgcaaaaatctgtggagttattccaattgcttaaagctgaaggaaaattcaattgttgttgaattcttaggagggtttgagtgtgtgaggattg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543598 |
ctgtgttgcaaaaatctgtggagttattccaattgcttaaagctgaaggaaaattcaattgttgttgaattcttaggagggtttgagtgtgtgaggattg |
33543499 |
T |
|
| Q |
115 |
aagctgttctgaatgatttatagaaagtaaaatagtaaccaaaacaaaaaacacagataccatagtgtttttgtcttgttttgttattatattctacaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
33543498 |
aagctgttctgaatgatttatagaaagtaaaatagtaaccaaaacaaaaaacacagataccatagtgtttttgttttgttttgttattatattctaaaga |
33543399 |
T |
|
| Q |
215 |
agcattggagttctctcaaaattgaagccttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543398 |
agcattggagttctctcaaaattgaagccttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaa |
33543299 |
T |
|
| Q |
315 |
gaatcaactgaattcaagcattataactcaacactatgaaattcattatttcacaggaaac |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33543298 |
gaatcaactgaattcaagcattataactcaacactatgaaattcattatttcacaggaaac |
33543238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University