View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13250_low_4 (Length: 389)
Name: NF13250_low_4
Description: NF13250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13250_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 117 - 304
Target Start/End: Original strand, 21332509 - 21332693
Alignment:
| Q |
117 |
tttgaaatatgcagttgcaaagatatcagattgtcatggtagatagacctgtgaagtgaagagttcaaaggaaacttctattatacaaatttagagtatt |
216 |
Q |
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| T |
21332509 |
tttgaaatatgtacttgcaaaaatctcagattgtcatggtagatagacatgtgaagtgaagagttcaatagcaacttctattatacaa---tagagtatt |
21332605 |
T |
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| Q |
217 |
cttcagtagtcagtatcttcttaggagtgacattatatgtggcaacaccggttatcggagtagaacttttgctttctgcggtataaaa |
304 |
Q |
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| T |
21332606 |
attcagtagttggtaccttcataggagtgacattatatgtagaaacaccggttatcggagtagaactttggttttctgcggtataaaa |
21332693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 131 - 304
Target Start/End: Original strand, 29219157 - 29219329
Alignment:
| Q |
131 |
ttgcaaagatatcagattgtcatggtagatagacctgtgaagtgaagagttcaaaggaaacttctattatacaaatttagagtattcttcagtagtcagt |
230 |
Q |
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| T |
29219157 |
ttgcaaaaatctcagattgtcatggcagatagacctgtgaagcgaagagttcaatggcaacttctattatacaa-tatagagtattcttcagtagtcagt |
29219255 |
T |
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| Q |
231 |
atcttcttaggagtgacattatatgtggcaacaccggttatcggagtagaacttttgctttctgcggtataaaa |
304 |
Q |
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| T |
29219256 |
accttcataggagtgacattatatgtagaaacaccggttattggagtagaactttggttttctacggtataaaa |
29219329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 30342411 - 30342485
Alignment:
| Q |
299 |
ataaaaacacatttaatttgagatgaaatttgtcacagagacct-ctcagctagtaaagtaaaagttcttataac |
372 |
Q |
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| T |
30342411 |
ataaaaacacattaaatttgagatgaaatttgtcagagacacctcctcagctagtaaagtaaaagttcttataac |
30342485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 29220759 - 29220830
Alignment:
| Q |
299 |
ataaaaacacatttaatttgagatgaaatttgtcacagagacctc-tcagctagtaaagtaaaagttcttat |
369 |
Q |
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|||||||| |||| |||||| || |||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
29220759 |
ataaaaacgcattaaatttgtgagaaaatttgtcatagaggcctcctcagctagtaaagtaaaagttcttat |
29220830 |
T |
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