View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13250_low_5 (Length: 377)
Name: NF13250_low_5
Description: NF13250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13250_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 46927855 - 46928117
Alignment:
| Q |
17 |
atcatgttatacttatttagccacctttggataaagttcatttcatattctttattgtaaaatgt-----aagaaaataagaacatttgttaataaatat |
111 |
Q |
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| T |
46927855 |
atcatgttatacttatttagccacctttggattaagttcatttcatattctttattgt-aaatgtaagaaaagaaaataagaacattttttaataaatac |
46927953 |
T |
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| Q |
112 |
cactccggtccttttctaatacaatattaacagtataataaaagtagatggtccagttgcacatgcaaagctttcttctcaaatgctcacttatgttctc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46927954 |
cactccggtccttttctaatacaatattaacagtataataaaagtagatggtccagttgcacatgcaaagctttcttctcaaatgctcacttatgttctc |
46928053 |
T |
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| Q |
212 |
ttatctaaattagctaacttgatctttccaccacaagactttatttggtggatttaatccttcc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46928054 |
ttatctaaattagctaacttgatctttccaccacaagactttatttggtggatttaatccttcc |
46928117 |
T |
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