View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13250_low_7 (Length: 249)
Name: NF13250_low_7
Description: NF13250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13250_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 7010208 - 7010431
Alignment:
| Q |
11 |
aatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacgagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgt |
110 |
Q |
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| T |
7010208 |
aatgaatgcggagaatttctgactgcaaacaatccgattttgtgttacaagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgt |
7010307 |
T |
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| Q |
111 |
gttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagcca |
210 |
Q |
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| T |
7010308 |
gttttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagcca |
7010407 |
T |
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| Q |
211 |
ctgattcttctcaagtgttgaagg |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
7010408 |
ctgattcttctcaagtgttgaagg |
7010431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 7007142 - 7007353
Alignment:
| Q |
13 |
tgaatgcggagaatttctgactgcaaacaatccgattttgtgttacgagcgatgaattttgtacggttgatgtgttaatttgttgtttgaattgttgtgt |
112 |
Q |
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| T |
7007142 |
tgaatgcggagaatttctgacttcagataatccgaatttgtgtttcgagtgatgaagtttgtagggttgatgtgttaatttgtt----------ttgtgt |
7007231 |
T |
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| Q |
113 |
tttatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccact |
212 |
Q |
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| T |
7007232 |
tatatagaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccacc |
7007331 |
T |
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| Q |
213 |
gattcttctcaagtgttgaagg |
234 |
Q |
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| T |
7007332 |
gattcttctcaagtgttgaagg |
7007353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1358572 - 1358688
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1358572 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1358671 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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| T |
1358672 |
ttctcaagtgttgaagg |
1358688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1374124 - 1374240
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1374124 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1374223 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
1374224 |
ttctcaagtgttgaagg |
1374240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1394671 - 1394787
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1394671 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1394770 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
1394771 |
ttctcaagtgttgaagg |
1394787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1350666 - 1350782
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1350666 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1350765 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
1350766 |
ttctcaagtgttgaagg |
1350782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1384320 - 1384436
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1384320 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1384419 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
1384420 |
ttctcaagtgttgaagg |
1384436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1390425 - 1390541
Alignment:
| Q |
118 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1390425 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
1390524 |
T |
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| Q |
218 |
ttctcaagtgttgaagg |
234 |
Q |
| |
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||||||||||||||||| |
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| T |
1390525 |
ttctcaagtgttgaagg |
1390541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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