View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13251_high_2 (Length: 473)
Name: NF13251_high_2
Description: NF13251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13251_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Original strand, 2528869 - 2529314
Alignment:
| Q |
12 |
catcatcgtctgaattctgaaccagagattcaggcaaattttcctttttctttgagcattttagtcccaaataaatcatgccagaaatgacaaacaatgt |
111 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2528869 |
catcaccgtctgaattctcgaccagagattcaggcaaattttcctttttctttgagcattttagtcccacataaatcatgccagaaatgacaaacaatgt |
2528968 |
T |
|
| Q |
112 |
tactattacaatgatcacaacaactattgtctgcacattcctgtttctactttctgctgtgtctgtttctgtgtcactacttccgtctcttgagacttta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528969 |
tactattacaatgatcacaacaactattgtctgcacattcctgtttctactttctgctgtgtctgtttctgtgtcactacttccgtctcttgagacttta |
2529068 |
T |
|
| Q |
212 |
atgtaagagacaaaaccagaatcattatcagttttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagcaa |
311 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529069 |
atgtaagaggcaaagccagaatcattatcagttttcacaaagcttccaatcctatctaaaaggtaacagtttcctgaactgctttgaaagaacatagcaa |
2529168 |
T |
|
| Q |
312 |
gacatgagcagttttcattgcaagaatttttgcaaccaatcaaatcggttttcgaagaaggtggaagaaatccaagtgcaaagtaattgagtccatcatc |
411 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529169 |
gacatgagcagttttcactgcaagaatttttgcaaccaatcaaatcggttttcaaagaaggtggaagaaatccaagtgcaaagtaattgagtccatcatc |
2529268 |
T |
|
| Q |
412 |
acctttaacaagctcaacggaacttttcgagttacaaggagaaaca |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2529269 |
acctttaacaagctcaacggaacttttcgagttacaaggcgaaaca |
2529314 |
T |
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