View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13251_high_3 (Length: 437)

Name: NF13251_high_3
Description: NF13251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13251_high_3
NF13251_high_3
[»] chr2 (3 HSPs)
chr2 (14-304)||(14918216-14918509)
chr2 (157-358)||(42296103-42296302)
chr2 (343-422)||(14918141-14918222)
[»] chr7 (5 HSPs)
chr7 (225-422)||(18398800-18399006)
chr7 (157-422)||(6239079-6239348)
chr7 (157-310)||(18151950-18152111)
chr7 (219-420)||(32401669-32401877)
chr7 (242-358)||(28284177-28284286)
[»] chr4 (9 HSPs)
chr4 (157-358)||(21201875-21202075)
chr4 (157-358)||(27259015-27259218)
chr4 (157-354)||(35944906-35945104)
chr4 (157-323)||(2916409-2916577)
chr4 (155-389)||(40088505-40088728)
chr4 (157-303)||(44344433-44344575)
chr4 (52-151)||(12704860-12704964)
chr4 (63-151)||(48517555-48517643)
chr4 (67-149)||(48514686-48514768)
[»] chr1 (3 HSPs)
chr1 (183-358)||(52973630-52973805)
chr1 (365-422)||(33188783-33188840)
chr1 (200-308)||(10359036-10359147)
[»] chr3 (2 HSPs)
chr3 (223-358)||(896326-896460)
chr3 (219-264)||(35408617-35408662)
[»] chr6 (1 HSPs)
chr6 (158-358)||(29179506-29179709)
[»] chr5 (2 HSPs)
chr5 (52-151)||(37075299-37075399)
chr5 (172-306)||(22414245-22414380)
[»] chr8 (2 HSPs)
chr8 (79-151)||(33293495-33293567)
chr8 (87-155)||(19488910-19488979)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 14918509 - 14918216
Alignment:
Q  14 agagagcaacctagttcgtgactaatctcaaaatattttatctaacaaaattatttttgtgt--tcaagtttgattttttgcagaaataattccaagtgt 111  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  14918509 agagagcgacctagttcgtgactcatcttaaaatattttatctaacaaaattatttttgtgtgttcaagtatgattttttgcagaaataattccaagtgt 14918410  T
Q  112 tc-atagatgcagcaacaatttaaagtgttcaagaaatgtttcaaaataattattaactaatcattccataaccataaaagtggttagttcataatgaac 210  Q
    || |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14918409 tcgatagatgcagcaacaatttaaagtgttcaagaaatgttccaacataattattaactaatcattccataaccataaaagtggttagttcataatgaat 14918310  T
Q  211 ataaacacaaataaaaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14918309 ataaacacaaataaaaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaataacaat 14918216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 358
Target Start/End: Original strand, 42296103 - 42296302
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggtt-agttcataatgaacataaacacaaa--taaaaatggagaagataagagataaaaacata 253  Q
    ||||||||||  |||||||||| |||||| |||||||||| || ||||||||||||||||||||||  || |||| |||||||||| || ||||||||||    
T  42296103 ataattattacttaatcattccttaaccacaaaagtggtttagctcataatgaacataaacacaaaaatataaatagagaagataatagttaaaaacata 42296202  T
Q  254 attgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaatttac 353  Q
    ||||||||||| ||    ||  |||| ||||| ||||||||||||||||||| | |||||||||||||||||| ||||||   |||  ||||||||||||    
T  42296203 attgcataaattat----tactattatagtttgcaaaagagaaattacaatcttctgaggatgaaggtgaatt-tttgcagcactcaattaacaatttac 42296297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 14918222 - 14918141
Alignment:
Q  343 taacaatttactctaaaacgctaagattctaattattatgctttcaatatggaatagatgaagg--tatgagatgaagaaga 422  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14918222 taacaatttactctaaaactctaagattctaattattatgctttcaatatggaatagatgaaggtatatgagatgaagaaga 14918141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 225 - 422
Target Start/End: Original strand, 18398800 - 18399006
Alignment:
Q  225 aaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaa 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  18398800 aaatggagaagataagggataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaattctttgaggatgaaggtgag 18398899  T
Q  325 ttctttgcaaatctcccttaacaatttact---------ctaaaacgctaagattctaattattatgctttcaatatggaatagatgaaggtatgagatg 415  Q
    ||||||||| ||  ||||||||||||||||         ||||||| |||||||| ||| ||  ||||||||| ||||||||| || |||||||||||||    
T  18398900 ttctttgcatattacccttaacaatttactctaatgaacctaaaactctaagattataactaccatgctttcagtatggaatatattaaggtatgagatg 18398999  T
Q  416 aagaaga 422  Q
    |||||||    
T  18399000 aagaaga 18399006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 157 - 422
Target Start/End: Complemental strand, 6239348 - 6239079
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggttagttcataatgaacataaacacaaataa--aaatggagaagataagagataaaaacataa 254  Q
    |||||||||| ||||||||||| |||||  |   |||||| |||||||||||||||||||||||| |   ||||||||||||||||| ||||||||||||    
T  6239348 ataattattacctaatcattccgtaaccgcag--gtggtttgttcataatgaacataaacacaaaaattgaaatggagaagataagatataaaaacataa 6239251  T
Q  255 ttgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaat----- 349  Q
    ||||||||||| |   |||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||| | ||| || ||||||         
T  6239250 ttgcataaatctt---ataagattagagtttacacaagataaattaaaatcctttgaggatgaaggtg-attctttgcaga-ctcactaaacaattcact 6239156  T
Q  350 ----ttactctaaaacgctaagattctaattattatgctttcaatatggaatagatgaaggtatgagatgaagaaga 422  Q
        | |||||||||| |||||||||||| || ||||||||| ||| | ||| || |||||||||||||||||||||    
T  6239155 ttaatgactctaaaactctaagattctaactaatatgctttctataggaaatggaagaaggtatgagatgaagaaga 6239079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 157 - 310
Target Start/End: Complemental strand, 18152111 - 18151950
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggttagttcataatgaacataaacacaaa--taaaaatggagaag------ataagagataaaa 248  Q
    |||||||||| ||||||||||| || ||| |||||||||||||||||||||||| ||||||||||  || ||||||| |||      |||||| |||||     
T  18152111 ataattattatctaatcattccttagccacaaaagtggttagttcataatgaacttaaacacaaaaatagaaatggaaaaggaaaagataagaaataaag 18152012  T
Q  249 acataattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttg 310  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  18152011 acataattgcataaatcatttgataagattagagtttataaaagagaaattacaatcctttg 18151950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 219 - 420
Target Start/End: Complemental strand, 32401877 - 32401669
Alignment:
Q  219 aaataaaaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaa 318  Q
    ||||| ||| |||||||| |  ||||||||||||||||||||||||||||| |  | | ||||||||| ||||||| ||||||||||||||||||||| |    
T  32401877 aaatagaaacggagaagagagtagataaaaacataattgcataaatcattaaaataaagtagagtttataaaagag-aattacaatcctttgaggatgga 32401779  T
Q  319 ggtgaattctttgcaaatctcccttaacaattt---------actctaaaacgctaagattctaattattatgctttcaatatggaatagatgaaggtat 409  Q
     | || ||||||||||  ||| | |||||||||         |||||||||| | |||| ||||| || ||||||||||| ||| ||| |||||||||||    
T  32401778 agcgagttctttgcaacactcacataacaatttattctaatgactctaaaacacaaaga-tctaactactatgctttcaagatgaaattgatgaaggtat 32401680  T
Q  410 gagatgaagaa 420  Q
    |||||||||||    
T  32401679 gagatgaagaa 32401669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 28284177 - 28284286
Alignment:
Q  242 gataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctccc 341  Q
    |||||||||||||||||||||||| ||| | |||       |||||||||||||||||||||||||||||||||||   ||||||||||||||  ||| |    
T  28284177 gataaaaacataattgcataaatccttaaaaaag-------tttacaaaagagaaattacaatcctttgaggatgatattgaattctttgcaacactcgc 28284269  T
Q  342 ttaacaatttactctaa 358  Q
     || |||||||||||||    
T  28284270 atatcaatttactctaa 28284286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 157 - 358
Target Start/End: Original strand, 21201875 - 21202075
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggttagttcataatgaacataaacacaaataa--aaatggagaagataagagataaaaacataa 254  Q
    |||||||||| ||||||||||| |||||| ||||||||||||| ||  ||||||||| ||||||| |   ||||||||||||||||||||||||||| ||    
T  21201875 ataattattatctaatcattccctaaccacaaaagtggttagtgca--atgaacatatacacaaaaattgaaatggagaagataagagataaaaacacaa 21201972  T
Q  255 ttgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaatttact 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||| | |||||||||||| |||||    
T  21201973 ttgcataaatcattagataagattagagtttacaaaagagaaatt-caatcctttgaaaatgaaggtggattctttgcagacctcccttaacaaattact 21202071  T
Q  355 ctaa 358  Q
    ||||    
T  21202072 ctaa 21202075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 157 - 358
Target Start/End: Original strand, 27259015 - 27259218
Alignment:
Q  157 ataattattaactaatcattccataaccataaaa-gtggttagttcataatgaacataaacacaaataa--aaatggag-aagataagagataaaaacat 252  Q
    |||||||||| ||||||||||| |||||| |||| ||||||||| ||  ||||||||||||||||| |   |||||||| |||||||||||||||||||     
T  27259015 ataattattatctaatcattccctaaccacaaaaagtggttagtgca--atgaacataaacacaaaaattgaaatggaggaagataagagataaaaacaa 27259112  T
Q  253 aattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaattta 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| | |||||||||||| |||    
T  27259113 aattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgagaatgaaggtgggttctttgcagacctcccttaacaaatta 27259212  T
Q  353 ctctaa 358  Q
    ||||||    
T  27259213 ctctaa 27259218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 354
Target Start/End: Complemental strand, 35945104 - 35944906
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggttagttcataatgaacataaacacaaataaaaa-tggagaagataagagataaaaacataat 255  Q
    |||||||||| |||||||||| ||||||| ||||||| |||  | ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  35945104 ataattattacctaatcattctataaccacaaaagtgattaccttataatgaacttaaacacaaataaaaaatggaaaagataagagataaaaacataat 35945005  T
Q  256 tgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaatttact 354  Q
    ||| |||||||||| |||||||||||||| ||  |||| |||||||||||||  |||||| || |||| ||||||||||  ||  ||||||||||||||    
T  35945004 tgcctaaatcattaaataagattagagttaacgtaagacaaattacaatcctccgaggataaatgtgagttctttgcaacactttcttaacaatttact 35944906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 2916409 - 2916577
Alignment:
Q  157 ataattattaactaatcattccataaccataaaagtggttagttcataatgaacataaacac--aaataaaaatggagaagataagagataaaaacataa 254  Q
    |||||||||| || |||||| | |||||| ||||||||||| |||||||| ||| |||||||  ||||| ||||||| || ||||||||||||||||| |    
T  2916409 ataattattaccttatcatttcctaaccacaaaagtggttaattcataataaacttaaacacgaaaatagaaatggaaaatataagagataaaaacatta 2916508  T
Q  255 ttgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtga 323  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||| ||||||||||| ||||||||||    
T  2916509 ttgcataaaccattagataagcttagagtttataaaaaagaaattataatcctttgagaatgaaggtga 2916577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 389
Target Start/End: Original strand, 40088505 - 40088728
Alignment:
Q  155 aaataattattaactaatcattccataaccataaaagtggttagttcataatgaacataa--acacaaataaaaatggagaagataagagataaaaacat 252  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||  ||||||||| ||||||| || |||||||||||||||||    
T  40088505 aaataattattacctaatcattccctaaccacaaaagtggttagttcataatgaacttaaatacacaaatagaaatggaaaatataagagataaaaacat 40088604  T
Q  253 aattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaattta 352  Q
    |||||||||| | | |||| | ||           |||| | || |||||||||||| ||||||||| || | ||||||| || ||| ||||| ||||||    
T  40088605 aattgcataagtaaatagaaatga-----------aaaatataagttacaatcctttaaggatgaagatg-agtctttgc-aacctcacttaataattta 40088691  T
Q  353 ctctaaaacgctaagattctaattattatgctttcaa 389  Q
    |||||||||  ||||||||||| || |||||||||||    
T  40088692 ctctaaaactttaagattctaactactatgctttcaa 40088728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 303
Target Start/End: Original strand, 44344433 - 44344575
Alignment:
Q  157 ataattattaactaatcattccataaccataaaa-gtggttagttcataatgaacataaacacaaa--taaaaatggagaagataagagataaaaacata 253  Q
    |||||||||| ||||||||| | |||||| |||| |||| |||||||||     ||||||||||||  || |||||||||||| ||||||||||| ||||    
T  44344433 ataattattacctaatcatttcctaaccacaaaaagtggctagttcata-----cataaacacaaaaatagaaatggagaagacaagagataaaatcata 44344527  T
Q  254 attgcataaatcatt-agataagattagagtttacaaaagagaaattacaa 303  Q
    |||| |||||||||| |||||||   ||  |||||||||| ||||||||||    
T  44344528 attgaataaatcattaagataag---aggatttacaaaagggaaattacaa 44344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 12704860 - 12704964
Alignment:
Q  52 tatctaacaaaattatttt-tgtg--ttcaagtttga-ttttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaa 146  Q
    ||||||||| ||||||||| ||||  ||||||||||| |||||||||||| |  || ||||||||| | ||||||| |||| ||||||||||||||||||    
T  12704860 tatctaacataattattttgtgtgctttcaagtttgaattttttgcagaattgttttcaagtgttcgacagatgcaacaactatttaaagtgttcaagaa 12704959  T
Q  147 atgtt 151  Q
    |||||    
T  12704960 atgtt 12704964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 48517643 - 48517555
Alignment:
Q  63 attatttttgtgttcaagtttgattttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaaatgtt 151  Q
    |||||||||||||| |||||||||| ||||||||||| ||| ||||||||| | |  | || ||||||||| ||||||||||||||||||    
T  48517643 attatttttgtgttaaagtttgattctttgcagaaatgatttcaagtgttcgacatgttcatcaacaattt-aagtgttcaagaaatgtt 48517555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 48514768 - 48514686
Alignment:
Q  67 tttttgtgttcaagtttgattttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaaatg 149  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||||||| | |  | || ||||||||| ||||||||||||||||    
T  48514768 tttttgtgttaaagtttgattctttgcagaaatgatttcaagtgttcgacatgttcaacaacaattt-aagtgttcaagaaatg 48514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 183 - 358
Target Start/End: Original strand, 52973630 - 52973805
Alignment:
Q  183 ccataaaagtggttagttcataatgaacataaacacaa--ataaaaatggagaagataagagataaaaacataattgcataaatcattagataagattag 280  Q
    |||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| |||||||||| || ||| |||||||    ||| |||    
T  52973630 ccataaaactggttagttcataatgaacataaacacaataatagaaatggagaagataaaagacaaaaacataactgaatatatcattaag--agagtag 52973727  T
Q  281 agtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaatttactctaa 358  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |  ||| |||||||||||||||||    
T  52973728 agtctacaaaagagaaattacaatcctttgaggatgaaggtgagttcgttgcagaaatccattaacaatttactctaa 52973805  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 33188783 - 33188840
Alignment:
Q  365 aagattctaattattatgctttcaatatggaatagatgaaggtatgagatgaagaaga 422  Q
    |||||||||| || ||||||||||| ||| |||  |||||||||||||||||||||||    
T  33188783 aagattctaactactatgctttcaagatgaaatgtatgaaggtatgagatgaagaaga 33188840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 10359147 - 10359036
Alignment:
Q  200 tcataatgaacataaa--cacaaataaaaatggagaagataagagataaaaacataattgcataaatcattagataagattagag-tttacaaaagagaa 296  Q
    ||||||||||| ||||  || ||||| |||||||||||||||   ||||||| |||||||| ||||| ||||    ||| ||||| |||||||| |||||    
T  10359147 tcataatgaacttaaaatcaaaaatagaaatggagaagataatgaataaaaatataattgcgtaaattattaagagagagtagagttttacaaaggagaa 10359048  T
Q  297 attacaatcctt 308  Q
    ||||||||||||    
T  10359047 attacaatcctt 10359036  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 358
Target Start/End: Complemental strand, 896460 - 896326
Alignment:
Q  223 aaaaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtg 322  Q
    ||||||||| ||||||| ||||  |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||  | |||    
T  896460 aaaaatgga-aagataaaagatggaaacataattgcataaatcattagataagaatagaatttacaaaagagaaatttcaatcctttgaggatagatgtg 896362  T
Q  323 aattctttgcaaatctcccttaacaatttactctaa 358  Q
    | ||||||||| |||  ||||| |||||||| ||||    
T  896361 agttctttgcagatcaaccttaccaatttaccctaa 896326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 35408617 - 35408662
Alignment:
Q  219 aaataaaaatggagaagataagagataaaaacataattgcataaat 264  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||||    
T  35408617 aaatagaaatggataagattatagataaaaacataattgcataaat 35408662  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 358
Target Start/End: Original strand, 29179506 - 29179709
Alignment:
Q  158 taattattaactaatcattccataaccataaaagtggtt-agttcataatgaacataaacacaaa--taaaaatggagaagataagagataaaaacataa 254  Q
    ||||||||| ||||||||| | |||||| |||||| ||| || |||||||  || ||||||||||  || |||||||||||||||  || ||||| ||||    
T  29179506 taattattacctaatcatttcttaaccacaaaagtcgtttagctcataatagacttaaacacaaaaatagaaatggagaagataacggaaaaaaatataa 29179605  T
Q  255 ttgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgaggatgaaggtgaattctttgcaaatctcccttaacaatttact 354  Q
    ||| ||||||||||| |  |||    ||||||||||  ||||||||||||||||||||||||||  ||| || |||| |   ||| ||||||||||||||    
T  29179606 ttgtataaatcattaaaagagaacgtagtttacaaagaagaaattacaatcctttgaggatgaaaatgagttgtttgaaccactcacttaacaatttact 29179705  T
Q  355 ctaa 358  Q
    ||||    
T  29179706 ctaa 29179709  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 37075399 - 37075299
Alignment:
Q  52 tatctaacaaaattatttt-tgtgttcaagtttgattttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaaatg 149  Q
    ||||||||||| ||||||| ||| || |||||||||| ||||||||||| ||| ||||||||| | | ||||||||||||||| ||||||||||||||||    
T  37075399 tatctaacaaagttattttatgttttaaagtttgattctttgcagaaatgatttcaagtgttcgacatatgcagcaacaattt-aagtgttcaagaaatg 37075301  T
Q  150 tt 151  Q
    ||    
T  37075300 tt 37075299  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 306
Target Start/End: Original strand, 22414245 - 22414380
Alignment:
Q  172 tcattccataaccataaaagtggtt-agttcataatgaacataaacacaaataaaaatggagaagataagagataaaaacataattgcataaatcattag 270  Q
    |||||||| ||||| |||| ||||| || ||||||||| | |||||||||||| || |||| |||||||   || ||||||||||||||| || || |||    
T  22414245 tcattccagaaccacaaaaatggtttaggtcataatgagcttaaacacaaatagaagtggaaaagataatgaatgaaaacataattgcattaaccaatag 22414344  T
Q  271 ataagattagagtttacaaaagagaaattacaatcc 306  Q
       | | ||||||||||||| |||||||||||||||    
T  22414345 tagaaagtagagtttacaaaggagaaattacaatcc 22414380  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 33293567 - 33293495
Alignment:
Q  79 agtttgattttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaaatgtt 151  Q
    ||||||||||||||||||||||||| ||||||||| ||  |||||||||| |||| ||||||||||||||||||    
T  33293567 agtttgattttttgcagaaataatttcaagtgttcgatgtatgcagcaac-attttaagtgttcaagaaatgtt 33293495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 19488910 - 19488979
Alignment:
Q  87 tttttgcagaaataattccaagtgttc-atagatgcagcaacaatttaaagtgttcaagaaatgtttcaa 155  Q
    |||||||| |||||||| ||||||||| | ||||||| |||||||||  |||||||||||||||||||||    
T  19488910 tttttgcataaataatttcaagtgttcgacagatgcaacaacaatttttagtgttcaagaaatgtttcaa 19488979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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