View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13251_low_4 (Length: 389)
Name: NF13251_low_4
Description: NF13251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13251_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 39245524 - 39245171
Alignment:
| Q |
19 |
taattaaccatgcctttgaattataccacttacacactcattattttaagtgccgaaatcacaagaccccaactattccaactaaatagctacaaagtct |
118 |
Q |
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| T |
39245524 |
taattaaccatgcctttgaattatatcacttacacactcgtttttttaagtgccgaaatcacaagaccccaactattccaactaaatagctacaaagtct |
39245425 |
T |
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| Q |
119 |
ggaccccaatgaacataatggaaaataaagtgaacattattcaaccacctaaaaaactcatcctatatccaaaaaataaacatgtgtttacggtgatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245424 |
ggaccccaatgaacataatggaaaataaagtgaacattattcaaccacctaaaaaactcatcctatatccaaaaaataaacatgtgtttacggtgatttt |
39245325 |
T |
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| Q |
219 |
ggttagttgtgaagtgtgtcaagcataccacaaacagatgtttatttagtgtggtcatgagattttgttggaatactagtcaaaatagagtaagaggtga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245324 |
ggttagttgtgaagtgtgtcaagcataccacaaacagatgtttatttagtgtggtcatgagattttgttggaatactagtcaaaatagagtaagaggtga |
39245225 |
T |
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| Q |
319 |
aggaataaacacaaagttttattggatagaattagtaatgtgtgaattgataaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245224 |
aggaataaacacaaagttttattggatagaattagtaatgtgtgaattgataaa |
39245171 |
T |
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