View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13251_low_5 (Length: 327)
Name: NF13251_low_5
Description: NF13251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13251_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 120 - 318
Target Start/End: Original strand, 39245979 - 39246178
Alignment:
| Q |
120 |
taataaatttgtgagaaatgtgtctgactattaataaatggaaaatactattcatagcgaacaatttggcccgaatttatctcgaggaaaagctgatata |
219 |
Q |
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| T |
39245979 |
taataaatttgtgagaaatatgtctgactattaataaatggaaaatactattcatagcgaacaatttggcccgaatttatctcgagaaaaagctgatata |
39246078 |
T |
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| Q |
220 |
ttttggttggaacgtatattcccttggttttctgtgtattccgcagagcaataattttgattggccaaattagttttc-ggaagcttttgtgagaattat |
318 |
Q |
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| T |
39246079 |
ttttggttggaacgtatattcccttggttttccgtgtattccgtagagcaacaattttgattggccaaattagttttcaggaagctttcgtgagaattat |
39246178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 39245541 - 39245668
Alignment:
| Q |
1 |
attgggaatatttattgaaagttaagaataaatgtgtgtgtctatgcactctctccccagtctcttattataaaaactttttaacaaaaatcaaaggtat |
100 |
Q |
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| T |
39245541 |
attgggaatatttatcgaaagttaagaataaatgtgtctgtctatgtactctctccccagtctcttattatagaaactttttaacaaaaatcaaaggtat |
39245640 |
T |
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| Q |
101 |
taaaataaacttgttagagtaataaatt |
128 |
Q |
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| T |
39245641 |
taaaagaaacttgttagagtaataaatt |
39245668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 39308104 - 39308169
Alignment:
| Q |
253 |
gtgtattccgcagagcaataattttgattggccaaattagttttcggaagcttttgtgagaattat |
318 |
Q |
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| T |
39308104 |
gtgtattccgcaaagcaacaactttgattggccaaattgattttcgggagctttcttgagaattat |
39308169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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