View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13252_high_6 (Length: 343)
Name: NF13252_high_6
Description: NF13252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13252_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 40442132 - 40441826
Alignment:
| Q |
17 |
agaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442132 |
agaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctat |
40442033 |
T |
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| Q |
117 |
aatgcagaatgcagagatacctaccagaatgcaggatataaaccagttagatgactatgcatgaccgaccaaggagcaataacattattagcatttgatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442032 |
aatgcagaatgcagagatacctaccagaatgcaggatataaaccagttagatgactatgcatgaccgaccaaggagcaataacattattagcatttgatt |
40441933 |
T |
|
| Q |
217 |
tacatatacctcatactcacagatagaaagctcctctatttccaatcttcatcaaaagtgacttaagtattaagctccaccagataagatttgcgaaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441932 |
tacatatacctcatactcacagatagaaagctcctctatttccaatcttcatcaaaagtgacttaagtattaagctccaccagataagatttgcgaaaac |
40441833 |
T |
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| Q |
317 |
aattctg |
323 |
Q |
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||||||| |
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| T |
40441832 |
aattctg |
40441826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 18812925 - 18812828
Alignment:
| Q |
17 |
agaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttct |
114 |
Q |
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|||||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||| ||||| |
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| T |
18812925 |
agaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaatgttct |
18812828 |
T |
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