View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13252_low_2 (Length: 479)
Name: NF13252_low_2
Description: NF13252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13252_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 15769899 - 15770147
Alignment:
| Q |
25 |
ataaatatgcttacatagtgatgtacataattcagaaaccacaacaaaggtagaagaagcaaaatgaagaaacaatgacaacaccttcaacaacataaac |
124 |
Q |
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| T |
15769899 |
ataaatatggttacatagtgatgtacataattcagaaaccacaacaaaggtagaagaagcaaaatgaggaaacaatgacaacaccttcaacaacataaac |
15769998 |
T |
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| Q |
125 |
tatcttgaaaacgaccgtgtccatgatcgtcgtgcgtagatgaagtcgtttccagtgaaacccatgagagaatttccatggtcgcaattgctccttgctc |
224 |
Q |
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| T |
15769999 |
tatcttgaaaacgaccgtgtccatgatcgtcgtgcgtagatgaagtcgtttccagtgaaacccatgagagaatttccatggtcgcaattgctccttgctc |
15770098 |
T |
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| Q |
225 |
aacttcttgaacgaccaacttgtcttcatcatatgataacttgaacttg |
273 |
Q |
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| T |
15770099 |
aacttcttgaacgaccaacttgtcttcatcatatgataacttgaacttg |
15770147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 305 - 479
Target Start/End: Original strand, 15770148 - 15770320
Alignment:
| Q |
305 |
gtctcactatttatcttggttatatcgtttaattttctatgtaacaaatatagttaatatgcacatatagaaaggagtgtgaggagcatttatatatatg |
404 |
Q |
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| T |
15770148 |
gtctcactatttatcttggttgtatcgtttaattttttatgtaacaaatatagttaatatgcacatatagaaaggagtgagaga--catgtatatatatg |
15770245 |
T |
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| Q |
405 |
cagaaaaggaatatatatattatgtgccttggacgcttcaatggtaagagtattggctggctttggctgtttttc |
479 |
Q |
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| T |
15770246 |
cagaaaaggaatatatatattatgtgccttggacgcttcaatggtaagagtattggctggctttggctgtttttc |
15770320 |
T |
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