View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13252_low_4 (Length: 383)
Name: NF13252_low_4
Description: NF13252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13252_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 10708898 - 10709270
Alignment:
| Q |
10 |
attatactatgcaaagaccagagttcgacctccggacaccccattgttacagatgcgtcacatgatgtaatccacaatttaaaacctaggtccaagtagc |
109 |
Q |
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| T |
10708898 |
attataatatgcaaggaccagagttcgaccctcggacacctcattgctacggatgcgtcacatgatgtgatgtgcaatttaaaacctaggtccaagtagc |
10708997 |
T |
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| Q |
110 |
atttctgatcaaacagttatcttcttcacatatataagtttataagagtggtacctatactcactcccttgcaagtgaaccagttgaagaggggagctgt |
209 |
Q |
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| T |
10708998 |
atttctgatcaaatagttatcttcttcacatatataagtttataagagtggtgcctatactcactcccttgcaagtgaaccagttgaagaggggagctgt |
10709097 |
T |
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| Q |
210 |
atacacatggccagtccaaatggttgcctaaacagctgtaataagagtcgaaatatgcaaaataaactttgtaattcccaatagtcctgtctcaaaattg |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10709098 |
atacacatggccagtccaaatggttacctaaacagctgtaataagagtcgaaatatgcaaaataaactttgtaattcccaatagtcctgtctcaaaattg |
10709197 |
T |
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| Q |
310 |
nnnnnnnttcttttatctttcacatagttatttgtattgatccaaaaatactcagtctccaagatagaaagaga |
383 |
Q |
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| T |
10709198 |
aagaaaattcttttatctttcacatagtt-tttgtattgatccaaaaatattcagtctccaagatagaaagaga |
10709270 |
T |
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