View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13252_low_7 (Length: 256)
Name: NF13252_low_7
Description: NF13252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13252_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 3371789 - 3372012
Alignment:
| Q |
25 |
tgttaaagtctacattcattcaatagcttgttaagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacaaagccttgtaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3371789 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacacagccttgtaat |
3371888 |
T |
|
| Q |
125 |
aactactagtttgttagaactagttgagttagttagagatccaatgttttatatatagttgcattgtaactaactttgattcattcaataaaagagatat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||| |
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|
| T |
3371889 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacaatgtaactaactttgattcattcaat-aaagagatat |
3371987 |
T |
|
| Q |
225 |
tcttttctctttgttctttcttctc |
249 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
3371988 |
tcttttctctgtgttctttcttctc |
3372012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 22980315 - 22980540
Alignment:
| Q |
25 |
tgttaaagtctacattcattcaatagcttgttaagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacaaagccttgtaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
22980315 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatctgttacacatcatagttactgtagtactgctcttagagtaacacagccttgtaat |
22980414 |
T |
|
| Q |
125 |
aactactagtttgttagaactagttgagttagttagagatccaatgttttatatatagttgcattgtaactaactttgattcattcaat-aaaagagata |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
22980415 |
aactacttgtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaaaagagata |
22980514 |
T |
|
| Q |
224 |
ttcttttctctttgttctttcttctc |
249 |
Q |
| |
|
|| |||||||| |||||||||||||| |
|
|
| T |
22980515 |
ttattttctctgtgttctttcttctc |
22980540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 20040584 - 20040357
Alignment:
| Q |
25 |
tgttaaagtctacattcattcaatagcttgttaagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacaaagccttgtaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20040584 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatccgttacacatcatagttactgtagtactgctcttagagtaacaaagccttgtaat |
20040485 |
T |
|
| Q |
125 |
aactactagtttgttagaactagttgagttagttagagatccaatgttttatatatagttgcattgtaactaactttgattcattcaata---aaagaga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
20040484 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaagaaaaaga |
20040385 |
T |
|
| Q |
222 |
tattcttttctctttgttctttcttctc |
249 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
20040384 |
tattcttttctctgtgttctttcttctc |
20040357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 20045305 - 20045078
Alignment:
| Q |
25 |
tgttaaagtctacattcattcaatagcttgttaagcaaagttatctgttacacatcatagttactatagtactgctcttagagtaacaaagccttgtaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20045305 |
tgttaaagtctacattcattcaatagcttgttcagcaaagttatccgttacacatcatagttactgtagtactgctcttagagtaacaaagccttgtaat |
20045206 |
T |
|
| Q |
125 |
aactactagtttgttagaactagttgagttagttagagatccaatgttttatatatagttgcattgtaactaactttgattcattcaata---aaagaga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
20045205 |
aactactagtttgttagaactagttgagttagttagagatccaaggttttatatatagctacattgtaactaactttgattcattcaataaagaaaaaga |
20045106 |
T |
|
| Q |
222 |
tattcttttctctttgttctttcttctc |
249 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
20045105 |
tattcttttctctgtgttctttcttctc |
20045078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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