View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13253_high_1 (Length: 2148)
Name: NF13253_high_1
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 1438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1438; E-Value: 0
Query Start/End: Original strand, 36 - 1583
Target Start/End: Original strand, 48798488 - 48800051
Alignment:
| Q |
36 |
tgccagttaggctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgttgaaataagattctagttaggaagctaag |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798488 |
tgccagttaggctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgttgaaataagattctagttaggaagctaag |
48798587 |
T |
|
| Q |
136 |
tattgtttgacttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagtttcgataagatgtgagcaaaacaccaagga |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798588 |
tattgtttgacttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagtttcgataagatgtgagcaaaacaccaagga |
48798687 |
T |
|
| Q |
236 |
tgggaacggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaattacttcaggaaaaggactcctagaggta |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798688 |
tgggaatggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaattacttcaggaaaaggactcctagaggta |
48798787 |
T |
|
| Q |
336 |
tatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatcttttaagtcatgaaacaaattataattt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48798788 |
tatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatcttttaagtcatgaaacaaattataattt |
48798887 |
T |
|
| Q |
436 |
ccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgtttgctttgatattttagctgcaatatggta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798888 |
ccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgtttgctttgatattttagctgcaatatggta |
48798987 |
T |
|
| Q |
536 |
atcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtgtctgttcatgatcttttaagctattgagttggtgtagt |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798988 |
atcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtgtctgttcatgatcttttaagctattgagttggtgtagt |
48799087 |
T |
|
| Q |
636 |
gatatataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgagtgcaagtttcaacgcgctgaaaccgtaa |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799088 |
gatatataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgagtgcaagtttcaacgcgctgaaaccgtaa |
48799187 |
T |
|
| Q |
736 |
cgaactttattatgttttgactttgatactccttactcatcttaacctctcttatcactcag--------------------agaattgcaaaagaataa |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48799188 |
cgaactttattatgttttgactttgatactccttactcatcttaacctctcttatcactcaggttaggtagttgttataagcagaattgcaaaagaataa |
48799287 |
T |
|
| Q |
816 |
caacaatattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggccgtaacaggactggtgggtgtcttgacag |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799288 |
caacaatattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggccgtaacaggactggtgggtgtcttgacag |
48799387 |
T |
|
| Q |
916 |
cagttttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcatttcttcaag |
1015 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48799388 |
cagttttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcattttttcaag |
48799487 |
T |
|
| Q |
1016 |
caacattttatcacaattttcttgtaatattattcttggtgaagagaatgaattggcatcattaatcatgttaaattttttggaagccttaattggatga |
1115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48799488 |
caacattttatcacaattttcttgtaatattattcttggtgaaga----gaattggcatcattaatcatgttaaaatttttggaagccttaattggatga |
48799583 |
T |
|
| Q |
1116 |
atccaagtcaatgtttattttttgcaagatacgtgtaaatacttataagatatgcaatcaaagaacctttctctctctaaactaaaacctgtgccctctc |
1215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48799584 |
atccaagtcaatgtttattttttgcaagatacatgtaaatacttataagatatgcaatcaaagaacctttcgctctctaaactaaaacctgtgccctctc |
48799683 |
T |
|
| Q |
1216 |
tctaaaacagatcgcggctccttctccttcaaatccaacaacactttctcaagatgtagaccatatgacggtggtgcgatgaggcgcggcctccgcacca |
1315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48799684 |
tctaaaacagatcgcggttccttctccttcaaatccaacaacactttctcaagatgtagaccatatgacggtggtgcgatgaggcgcggcctccacacca |
48799783 |
T |
|
| Q |
1316 |
cctcagctccggcgacgtgtttctcctgctgctccaccaacgtccttcatcctttcccggcggttgctctatagatcaactttcttgccgacgtcagatc |
1415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48799784 |
cctcagctccggcgacgtgtttctcctgctgctccaccgacgtccttcatccttttccggcggttgctttatagatcaactttcttgccgacgtcagatc |
48799883 |
T |
|
| Q |
1416 |
cggtgtgtcttttcggatctgttcattggttttggtggttgtgtcttctcggatctgttcttccggcttgatggggtgggtggtggtgccgccgtcgctg |
1515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48799884 |
cggtgtgtcttttcggatctgttcattggttttggtggttgtgtcttctcggatctgttcttccggcttgctggggtgggtggtggtgccgccgtcgctg |
48799983 |
T |
|
| Q |
1516 |
gtggcgttttgacaggtttagcagcacatctcacggtggtgcggtttggttcgtggtggcttccggga |
1583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48799984 |
gtggcgttttgacaggtttagcagcacatctcacggtggagcggtttggttcgtggtggcttccggga |
48800051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-46
Query Start/End: Original strand, 1657 - 1819
Target Start/End: Original strand, 4304769 - 4304932
Alignment:
| Q |
1657 |
cggatctgcttggtggccgttttgcggcggttgttgttcagtttcgcggtggttaagcttccttcctttagctc-gttttcagattcgttgccctttagg |
1755 |
Q |
| |
|
||||| ||||| ||||||||||| |||||| |||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||| ||| || |
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|
| T |
4304769 |
cggatttgcttagtggccgttttacggcggctgttgttcagatctgcggtggttaagcctccttcctttagctccgtttttagattcgttgcctttttgg |
4304868 |
T |
|
| Q |
1756 |
attccggcggccatttgtttccggcagcatctccgcgggtcctttatataccgtttcactccac |
1819 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4304869 |
attccggcgaccatttgtttccgacagcatctccgcgcgtcatttatataccgtttcactccac |
4304932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-43
Query Start/End: Original strand, 1654 - 1819
Target Start/End: Original strand, 7702641 - 7702806
Alignment:
| Q |
1654 |
atccggatctgcttggtggccgttttgcggcggttgttgttcagtttcgcggtggttaagcttccttcctttagctc-gttttcagattcgttgcccttt |
1752 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||| || ||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
7702641 |
atccggatttgcttggtggccgttttgcggcggctgttgttcagatctgcggtggttaacct-ccttcctttagttccgttttcagattcgttgcctttt |
7702739 |
T |
|
| Q |
1753 |
aggattccggcggccatttgtttccggcagcatctccgcgggtcctttatataccgtttcactccac |
1819 |
Q |
| |
|
||||||| | | ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
7702740 |
tggattccagagaccatttgtttccgacagcatctctgcgcgtcctttatataccgtttcactccac |
7702806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 2033 - 2125
Target Start/End: Original strand, 4305148 - 4305240
Alignment:
| Q |
2033 |
ggtgaggtggttagctggagtagttcagtctttatcgttggtttatgggtattcaccgtgacttcttcttccgagtgccatggtgttgttgat |
2125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| | || ||||||||||||||| |
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|
| T |
4305148 |
ggtgaggtggttagctggtgtagttcagtctttatcgttggtttgtgggtattcaccgtgactacttcttcgaaatgtcatggtgttgttgat |
4305240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1891 - 1974
Target Start/End: Original strand, 4305005 - 4305089
Alignment:
| Q |
1891 |
cgacgggcgccttctc-ttgtcaccgacagtcgcttttcaataatttgggttgagttttccgcttcagaccgccgtcgctgcccg |
1974 |
Q |
| |
|
|||||||||||||||| |||||| || | ||||||| ||||||| |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
4305005 |
cgacgggcgccttctccttgtcatcggcgatcgctttgcaataatctgggttgagttttctgcctcagaccggcgtcgctgcccg |
4305089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1891 - 1972
Target Start/End: Original strand, 7702865 - 7702947
Alignment:
| Q |
1891 |
cgacgggcgccttctctt-gtcaccgacagtcgcttttcaataatttgggttgagttttccgcttcagaccgccgtcgctgcc |
1972 |
Q |
| |
|
|||||| ||||||||||| ||||||| || ||||| ||||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
7702865 |
cgacggacgccttctctttgtcaccggtggttgctttgcaataatctgggttgagttttccgcctcagactagcgtcgctgcc |
7702947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1268 - 1329
Target Start/End: Original strand, 38148684 - 38148746
Alignment:
| Q |
1268 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctcagctccggcg |
1329 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
38148684 |
gatgtagatccaaatggcggtggtgcgatgaggtgcggcctccgcatcacctcacctccggcg |
38148746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1264 - 1312
Target Start/End: Original strand, 13994500 - 13994549
Alignment:
| Q |
1264 |
tcaagatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgca |
1312 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| ||||||||||| |
|
|
| T |
13994500 |
tcaagatgtagatccttatgacggtggtgcgatgaggcacggcctccgca |
13994549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1268 - 1320
Target Start/End: Complemental strand, 36594303 - 36594250
Alignment:
| Q |
1268 |
gatgtaga-ccatatgacggtggtgcgatgaggcgcggcctccgcaccacctca |
1320 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36594303 |
gatgtagatccaaatgatggtggtgcgatgaggcgcggcctccgcaacacctca |
36594250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1937 - 1974
Target Start/End: Original strand, 5555981 - 5556018
Alignment:
| Q |
1937 |
gggttgagttttccgcttcagaccgccgtcgctgcccg |
1974 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
5555981 |
gggttgtgttttccgcttcagaccggcgtcgctgcccg |
5556018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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