View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_11 (Length: 508)
Name: NF13253_high_11
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 68 - 489
Target Start/End: Original strand, 63198 - 63621
Alignment:
| Q |
68 |
attaatcacaagtagtcaaaacttgatgtgaaaatgca----aaaagtaaatatggcgtttaataaagaacaaaaattggtgcatagacgaaatggtaaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
63198 |
attaatcacaagtagtcaaaacttgatgtgaaaatgcattcaagaagtaaatatggcgtttaatgaagaacacaaattggtgcatagacgaaatggtaaa |
63297 |
T |
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| Q |
164 |
caaccattgaaactcacacacacaagtgaataaacctagattcaaaccccaattacggtattcaatttagcaatttcaacatttttatcagttgagtcag |
263 |
Q |
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| T |
63298 |
caaccattgaaactcatacata--agtggataaacctagattcgaactccaattatggtatctaatctagcaatttcaacatttttatcagttgagtcag |
63395 |
T |
|
| Q |
264 |
aacttatggacaatggtatggaccaactacgagcgtgacaagccaagacccaataaaaactggcccacaatggcgatggaccaagctaagcttcttgtgc |
363 |
Q |
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| T |
63396 |
aacttatggatagtggtatggaccaattacgagcgcgacaagccaagacccaataaagactggcccacaatggcgatggaccaggctaagcttcgtgtgc |
63495 |
T |
|
| Q |
364 |
ggcaccgcatgagagcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatg |
463 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
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| T |
63496 |
agcaccgcacgagagcaccctcgggtccacttttacctcatttcgcacatattcaccttattctcttacgggcttgagcgtcagagtactaacgtatatg |
63595 |
T |
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| Q |
464 |
caggcacaattctcctctgtcgtgaa |
489 |
Q |
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| T |
63596 |
cagacacaattctcctccgtcgtgaa |
63621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 490
Target Start/End: Original strand, 31696830 - 31696929
Alignment:
| Q |
391 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaat |
490 |
Q |
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| T |
31696830 |
cacttttaccacatttcacacatatccacctcattctcataccaacttgagtttcggagtgctaacatgcatgtagacacaattctcctctgtcgtgaat |
31696929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 26887989 - 26888055
Alignment:
| Q |
391 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacg |
457 |
Q |
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| T |
26887989 |
cacttttaccccattttgcacatatccacctcattctcatactaacttaagcatcagagttctaacg |
26888055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 490
Target Start/End: Original strand, 48954343 - 48954441
Alignment:
| Q |
392 |
acttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaat |
490 |
Q |
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| T |
48954343 |
acttttaccccatttcgcacatatccacctcattttcatactaacttgagcgtgagagtgctaacgagtttgcaggcacaattctcctccgccgtgaat |
48954441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 4156738 - 4156640
Alignment:
| Q |
391 |
cacttttacctcatttcgcacatattcaccttattctcttacggacttaagcatcagagtactaacgtatatgcaggcacaattctcctctgtcgtgaa |
489 |
Q |
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|||||||||| ||||| ||||||||||||| ||| || || |||||||| ||||||| |||| | | ||||| ||||||||||||||| |||||| |
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| T |
4156738 |
cacttttaccatatttcacacatattcacctcattttcatattgacttaagtgtcagagtgttaacatgtttgcagacacaattctcctctgccgtgaa |
4156640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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