View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_13 (Length: 457)
Name: NF13253_high_13
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 40803409 - 40803633
Alignment:
| Q |
9 |
catcaatcacaaggcaaataaaattagttattgcaatattatttaatatgcagaagttaatttcaatttatattctttaaaccagaaaatttgtgtttgg |
108 |
Q |
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| T |
40803409 |
catcaatcacaaggcaaataaaattagttattgcaatattatttaatatgcagaagttaatttcaatttatattctttaaaccagaaaatttgtgtttgg |
40803508 |
T |
|
| Q |
109 |
tttatgtacttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaactcacctacaattaggatggatgca |
208 |
Q |
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| T |
40803509 |
tttatgtacttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaactcacctacaattaggatggatgca |
40803608 |
T |
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| Q |
209 |
tgtggttacaacttacaacttacaa |
233 |
Q |
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| T |
40803609 |
tgtggttacaacttaaaacttacaa |
40803633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 235 - 441
Target Start/End: Original strand, 52516755 - 52516961
Alignment:
| Q |
235 |
ttacaaataacatcatcgaagccgtattactttacaaagttatgacacgaaatttggcagcagttaacaagtcaatatcatcatttctccttggagatgt |
334 |
Q |
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| T |
52516755 |
ttacaaataacattatcgacgccatattactttgcaaagttataatacgaaatttggtagcagttaacaagtcaatatcatcatttctccttagagatgt |
52516854 |
T |
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| Q |
335 |
tcatttgattttcaacaaccacacagatctaagtttcaaatttactacattatgatttttcatttatatagaaaatgaaagttcattacctccactatgg |
434 |
Q |
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| T |
52516855 |
tcattttattttcaacaaccacacacatctaagtttcaaatttactacatcatgatttgtcatttacatagaaaatgaaagttcattacttccactatgg |
52516954 |
T |
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| Q |
435 |
ctatatg |
441 |
Q |
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||||||| |
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| T |
52516955 |
ctatatg |
52516961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 40803647 - 40803796
Alignment:
| Q |
292 |
cagcagttaacaagtcaatatcatcatttctccttggagatgttcatttgattttcaacaaccacacagatctaagtttcaaatttactacattatgatt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40803647 |
cagcagttaacaagtcaatatcatcatttctccttggagatgttcatttgattttcaacaaccgcacagatctaagtttcaaatttactacattatgatt |
40803746 |
T |
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| Q |
392 |
tttcatttatatagaaaatgaaagttcattacctccactatggctatatg |
441 |
Q |
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| T |
40803747 |
tttcatttatatagaaaatgaaagttcattacctccactatagctatatg |
40803796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 52516659 - 52516710
Alignment:
| Q |
94 |
aaaatttgtgtttggtttatgtacttactgatggttggtaagtccttggcat |
145 |
Q |
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| T |
52516659 |
aaaatttgtgtttggtttatgtacttactgatggttggtaagtccttggcat |
52516710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 52516710 - 52516760
Alignment:
| Q |
169 |
tcacaactgcttgaactcacctacaattaggatggatgcatgtggttacaa |
219 |
Q |
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| T |
52516710 |
tcacaactgcttgaactagcctacagttaggatggatgcatgtggttacaa |
52516760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 41031976 - 41031765
Alignment:
| Q |
94 |
aaaatttgtgtttggtttatgtacttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaact---cacct |
190 |
Q |
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| T |
41031976 |
aaaatttgtgtttggtttatgtacttactgatggttggtaagtccttggcattctcgagaaatctgaagcctccctcacagctgcttgaactcgccacct |
41031877 |
T |
|
| Q |
191 |
acaattaggatggatgcatgtggttacaacttacaacttacaacttacaaataacatcatcgaagccgtattactttacaaagttatgacacgaaatttg |
290 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| | |||||||| |
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| T |
41031876 |
acaattaggatggatgcatgtggtta---------------------caaataacattatcgaagccatattactttacaaagttatgatatgaaatttg |
41031798 |
T |
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| Q |
291 |
gcagcagttaacaagtcaatatcatcatttctc |
323 |
Q |
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| T |
41031797 |
gcagcagttaacaagtcaatatcatcatttctc |
41031765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Complemental strand, 4641828 - 4641798
Alignment:
| Q |
405 |
gaaaatgaaagttcattacctccactatggc |
435 |
Q |
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| T |
4641828 |
gaaaatgaaagttcattacctccactatggc |
4641798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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