View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_16 (Length: 416)
Name: NF13253_high_16
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 2 - 402
Target Start/End: Original strand, 31742372 - 31742773
Alignment:
| Q |
2 |
gtagcgattaccctaacattgaaacactcaccttgagtgacattgttggtcgaggtcctcaatattccttatttaagatttattgatatcattgagttta |
101 |
Q |
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| T |
31742372 |
gtagcgattaccctaacactgaaacactcaccttgagtgacattgttggtcgaggtcctcaatattccttatttaagatttattgatattattgagttta |
31742471 |
T |
|
| Q |
102 |
aatttttaaatatgattgattttaccatctaaaaaggtctagcaatgcaacttattgtcctcttaccttctattttattcatatgtaagtaatccttgat |
201 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| ||| | | ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31742472 |
aattttcaaatatgattgattttgccatctaaaaaggtccagcgacgtaacttgttgtcctcttaccttctattctattcatatgtaagtaatccttgat |
31742571 |
T |
|
| Q |
202 |
atatataataaaa-aattaataaaattaatgttcaaacaaatatgcaagggggaagcaaagaatcaaacccacattcacttgctctcaccaaactaaata |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31742572 |
atatataataaaaaaattaataaaattaatgttcaaacaaatatgcaagggggaagcaaagaatcaaacccacattcacttgctctcaccaaactaaata |
31742671 |
T |
|
| Q |
301 |
taccacttggccaatgataataacatttcttttagagactcatgccaataaatatattttttgaaagcaaaaatttaaatataaccggtggggtataaag |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31742672 |
taccacttggccaatgataataacacttcttttagagactcatgccaataaatatattttttgaaagcaaaaatgtaaatataaccggtggggtataaag |
31742771 |
T |
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| Q |
401 |
tg |
402 |
Q |
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|| |
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| T |
31742772 |
tg |
31742773 |
T |
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